Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00718 TCTCTCTCACTTAATCATGGAACTGTTGTAGATGTATCTCAAACAACCAGTAAGACAAATTCCTCAGTTGCAAGCTATATCTCCGGTACTAGCTGGTTTTCCGGCGGAAGCAGCATTGATGTTGATCCAAATGGCTCGATTCTACCCTCTCCTGATTTAAGGGTCTTCAGCTTTACTGAATTGAGGACTGCGACTAAAAATTTCAGAGCTGATATGGTGCTCGGAGAGGGTGGTTTTGGTAAAGTCTACAAAGGCTGGCTCGAGGAGAGAGGACCTGGAAAGAACAAAAGCGGGACAGTAATTGCCGTAAAAAAACTGAGCTCAGAGAGCATGCAAGGTGTGGAGGAGTGGCAGTCGGAAGTGAATTTCTTGGGAAGGCTTTCTCACCCGAATCTCGTAAAGCTACTGGGATACGGTTGGGAGGATAGCTCTCTACTTCTGGTTTATGAATTCATGCGAAGGGGTAGCTTGGAAAACCATCTATTTGGAAGGGGTGCCGCAGTTCAGCCACTGCCGTGGGATATTCGGCTTAAGATTGCCATAGGAGCAGCTCGAGGTCTAGATTTCTTACACGCTTCGGAAAACAAAGTAATTTATAGAGATATCAAGGCTTCAAACATACTACTAGATGAGTCCTATAATGCCAAGATATCGGACTTTGGATTGGCCAAACTGGGTCCTTCGGCCAGTCAATCCCATCTTACAACTCGAGTTATGGGTACTAATGGCTATGCGGCTCCAGAATATTTAAATACTGGCCATCTCTATCTCAAGAGCGATGTATATGGTTTCGGTGTAGTCCTGATCGAAATGCTGACGGGTTTACGAACGATGGACTCAAATCGTCCGAAAGGGCATCAGAGCTTGGTCGATTGGATCAAACCTTACCTCTCGCAAAGAAGAAAATTGAAGAAGGTGATGGATTCTGGGTTGGAAGATAAATATCCAATAAAGTCCGCCTCTCAAATAGCTCAACTGGCTTTACAATGCATCGAGCAAGAACCGAAGAGCCGGCCTTCGATGAGAGAGGTTTTAGATATGCTAGAACAGATTGCAGGCGCCAAAGAGAGGCCAAAGGAGCTCAAAGCCGGTCCCCGTTCCACTAATCCAATCCCCCGTCGCCCAAGCCGGCAGCCTGGGGTCCAGCAATCCCCACTTCACCATCAACCGCGGCACATGCAATCATATTGA 1191 46.85 SLSLNHGTVVDVSQTTSKTNSSVASYISGTSWFSGGSSIDVDPNGSILPSPDLRVFSFTELRTATKNFRADMVLGEGGFGKVYKGWLEERGPGKNKSGTVIAVKKLSSESMQGVEEWQSEVNFLGRLSHPNLVKLLGYGWEDSSLLLVYEFMRRGSLENHLFGRGAAVQPLPWDIRLKIAIGAARGLDFLHASENKVIYRDIKASNILLDESYNAKISDFGLAKLGPSASQSHLTTRVMGTNGYAAPEYLNTGHLYLKSDVYGFGVVLIEMLTGLRTMDSNRPKGHQSLVDWIKPYLSQRRKLKKVMDSGLEDKYPIKSASQIAQLALQCIEQEPKSRPSMREVLDMLEQIAGAKERPKELKAGPRSTNPIPRRPSRQPGVQQSPLHHQPRHMQSY 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43020846 43023059 + Bma028082.1 Bma08g00718 87545

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00718 396 ProSiteProfiles Protein kinase domain profile. 68 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00718 396 MobiDBLite consensus disorder prediction 351 396 - -
Bma08g00718 396 PANTHER OS01G0588500 PROTEIN-RELATED 15 362 - -
Bma08g00718 396 MobiDBLite consensus disorder prediction 371 396 - -
Bma08g00718 396 SMART serkin_6 68 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00718 396 ProSitePatterns Protein kinases ATP-binding region signature. 74 105 IPR017441 GO:0005524
Bma08g00718 396 PANTHER SERINE/THREONINE-PROTEIN KINASE PIX13-RELATED 15 362 - -
Bma08g00718 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Bma08g00718 396 Pfam Protein tyrosine and serine/threonine kinase 72 347 IPR001245 GO:0004672|GO:0006468
Bma08g00718 396 CDD STKc_IRAK 74 351 - -
Bma08g00718 396 Gene3D Phosphorylase Kinase; domain 1 52 151 - -
Bma08g00718 396 SUPERFAMILY Protein kinase-like (PK-like) 45 348 IPR011009 -
Bma08g00718 396 Gene3D Transferase(Phosphotransferase) domain 1 152 365 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00718 - - - csin:114323872 537.339
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g00077 Bma-Chr6:1192143 Bma08g00718 Bma-Chr8:43020846 3.94E-156 dispersed
Bma08g00718 Bma-Chr8:43020846 Bma03g00130 Bma-Chr3:1002493 2.02E-128 dispersed
Bma08g00718 Bma-Chr8:43020846 Bma01g01866 Bma-Chr1:68420024 6.44E-130 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g292 . . . . . . . . . Cmo11g01785 . . . . . Cpe04g00630 . Bhi05g01584 . . . . . . Cla02g00348 . . . . . . Cone12ag1276 Cone8ag1330 Cone3ag1248 . . Csa07g00185 . Cme01g01148 . Blo13g00474 . . . . . Bma08g00718 . . . Cma11g01334 Cma19g00797 Car11g01412 . . . . . . . . . . . . . . . . . Lsi11g01284 . Chy01g00595 Cme11g01308
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004416 1 3 2 1 1 0 2 0 0 1 1 0 2 1 0 1 0 0 1 0 1 0 0 0 0 1 0 0 0 1 20
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66670 PF07714 PK_Tyr_Ser-Thr 2.50E-48 CL0016 Bma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00718 Bma_Chr08 FPKM 0.0 0.0 0.0 0.760514 14.026257 13.756545 22.729239 0.0 0.0 0.0