Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00719 ATGGGCGGCGGTGGTGATTCCGGTGAGCCCAGAATAGGTGGTGACGGTGAAGAAGGGGTCGTGGTTAATATTCGCTGCTCGAACGGTACGAAATTTACGGTGAGGACGAGCCTCGAGTCAACGGTTGGAGCCTTTAAAGTAATTTTAGCTCAGAATTGGGATGTTCCTGCTGATCAGCAGCGCTTGATCTACAAAGGCCGCATTCTGAAGGATGACCAGACCTTAGATAGTTATGGTATGCAGGCAGATCATACAGTTCACATGGTTCGAGGTTTTGCCCCTGCTGCATCAGCGCCAACTACAACTGCTGCTGCTGTTGCTGATACTGGAACTGTTAACAGCACTCCAGGTGTCACAAGAGGTGTTGGTTCCACTGATAGTGGAGCTTTAGGAAATGGAACACCTTTATTTCCTGGACTGGGTTTCAACCCACTAGGTGGAGGTGGAGCATCTGGTTTGTTTGGAGCGGGTCTTCCAGAATTCGAGCAAGTGCAACAACAACTGACTCAGAACCCAAACATGATGAGGGAAATAATGAACATGCCTGCAATTCAAAACCTAATGAGTAATCCTGATTTGATGCGAACTTTGATTATGAGCAATCCTCAAATGCGGGAAATTATTGACAGAAATCCAGAACTTGCTCATATTCTTAATGATCCTGGCATTCTCAGGCAGACTTTAGAGGCTGCAAGGAACCCAGAACTCATGCGTGAGATGATGAGAAACACTGACAGGGCTATGAGTAATATTGAATCTAGTCCCGAAGGATTCAACATGCTAAGGCGTATGTATGAAAATGTTCAAGAGCCATTTATGAATGCTACCACAATGGGTGGGAATACGGGAAACGATTTGAGTTCAAACCCCTTTACAGCCCTCTTAGGAAACTCAGGCGGGGCCCAACCTAGGTCTGGGGTTAATAATACTTTAGCCACTGGAACTGAAACAAATACAGGGACTACTGCTCCAAATACGAATCCACTTCCTAATCCATGGGGGGGAAATCAAGCAAACACTACAAGGCCCAATCCCGCTGGGGAATCTAGGACTCCTAGAATTGGTGATTTGGGAGGGCTAGGTCTTCCTGATATGGAGCAGATGATGAGTGGTGGGCCTGATGCTGCTATGTTGAATCAGTTTTTGCAAAACCCCGCAATATCCCAGATGATGCAAAGCCTGCTCTCTAACCCTCAATATATGAATCAGATTCTCAGTCTCAATCCCCAGTTGCGGGGCATGGTTGACATGGATCCTCAATTAAGAGAAATGATGCAAAATCCAGAGCTTCTTCGCCAGTTAACAAATCCTGAGACAATGCAGCAAATGCTATCACTACAACAATCACTTCTGTCTCAGCTTGTTTCACTATTTAAAACTTTTAAGATTTTTCAAATAATAGGAACTCCCAATAATGCCGGATTAGAGTTGTTGATGAACATGTTCGGTGGTCTTGGAGCTGGTGGAATGACTGTCCCTAGCAATCCCAATGTTCCCCCAGAAGAACTATATGCAACTCAGCTTTCGCAGCTTCAAGAAATGGGATTTTTCGACACACAAGAGAATATAAGGGCACTTCGCGCCACTGCAGGGAACGTACATGCGGCGGTAGAGCGACTTTTGGGGAATCCAGGGCCGTAG 1641 45.95 MGGGGDSGEPRIGGDGEEGVVVNIRCSNGTKFTVRTSLESTVGAFKVILAQNWDVPADQQRLIYKGRILKDDQTLDSYGMQADHTVHMVRGFAPAASAPTTTAAAVADTGTVNSTPGVTRGVGSTDSGALGNGTPLFPGLGFNPLGGGGASGLFGAGLPEFEQVQQQLTQNPNMMREIMNMPAIQNLMSNPDLMRTLIMSNPQMREIIDRNPELAHILNDPGILRQTLEAARNPELMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFMNATTMGGNTGNDLSSNPFTALLGNSGGAQPRSGVNNTLATGTETNTGTTAPNTNPLPNPWGGNQANTTRPNPAGESRTPRIGDLGGLGLPDMEQMMSGGPDAAMLNQFLQNPAISQMMQSLLSNPQYMNQILSLNPQLRGMVDMDPQLREMMQNPELLRQLTNPETMQQMLSLQQSLLSQLVSLFKTFKIFQIIGTPNNAGLELLMNMFGGLGAGGMTVPSNPNVPPEELYATQLSQLQEMGFFDTQENIRALRATAGNVHAAVERLLGNPGP 546
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43038838 43042207 - Bma028083.1 Bma08g00719 87546

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00719 546 Gene3D - 486 546 - -
Bma08g00719 546 Gene3D - 14 105 - -
Bma08g00719 546 SMART uba_6 504 542 IPR015940 -
Bma08g00719 546 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 499 543 IPR015940 -
Bma08g00719 546 Gene3D - 196 254 - -
Bma08g00719 546 MobiDBLite consensus disorder prediction 110 130 - -
Bma08g00719 546 PANTHER UBIQUILIN 1 545 - -
Bma08g00719 546 SUPERFAMILY Ubiquitin-like 16 99 IPR029071 -
Bma08g00719 546 MobiDBLite consensus disorder prediction 295 356 - -
Bma08g00719 546 Pfam UBA/TS-N domain 504 540 IPR015940 -
Bma08g00719 546 SMART ubq_7 20 91 IPR000626 GO:0005515
Bma08g00719 546 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 1 545 - -
Bma08g00719 546 CDD UBA_PLICs 504 542 - -
Bma08g00719 546 SMART CBM 201 240 IPR006636 -
Bma08g00719 546 SMART CBM 408 443 IPR006636 -
Bma08g00719 546 SMART CBM 355 404 IPR006636 -
Bma08g00719 546 SMART CBM 147 188 IPR006636 -
Bma08g00719 546 CDD Ubl_Dsk2p_like 20 92 - -
Bma08g00719 546 SUPERFAMILY UBA-like 500 542 IPR009060 GO:0005515
Bma08g00719 546 MobiDBLite consensus disorder prediction 295 347 - -
Bma08g00719 546 ProSiteProfiles Ubiquitin domain profile. 20 89 IPR000626 GO:0005515
Bma08g00719 546 Pfam Ubiquitin family 22 89 IPR000626 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00719 K04523 UBQLN, DSK2; ubiquilin - qsu:112012853 781.941
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00719 Bma-Chr8:43038838 Bma01g00712 Bma-Chr1:6495166 2.38E-09 dispersed
Bma03g00635 Bma-Chr3:5235540 Bma08g00719 Bma-Chr8:43038838 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g280 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme01g01154 . . . . Bpe15g00787 . . Bma08g00719 . . . Cma11g01337 . . . . . . . . . . . . . . . . . . . . . Chy01g00602 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005812 1 1 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 4 2 0 1 1 0 1 1 1 1 2 1 3 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00719 Bma_Chr08 FPKM 117.760696 126.592293 255.333099 259.566559 138.640488 113.743607 127.267418 77.018913 80.261299 82.623116