Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00729 ATGGGAGAGATATTGGTCCAATTAAGTTCCAAACAGGAGCTTCCTCTTTACCAACCCATCACCACGAATAGCCCGGAAATACCTCCGCCGGTCATCGCCGTCAACCCAGAAGAAGCTGCCGTTCAATCCTCAGTTGCTTTGCATGATGACGAGCTTAATTTTCAGGATTCGCTGCTTCCATTAACTGAGTCGAGAACTGGGAGTATCTACTCTGCAATATTTCATTTGTTGTCGTCGGGAATCGGCTTTCAGGCTCTTCTTATTCCCGTCTCATTTGCAACTCTTGGATGGGGCTGGGGAATTACCTGTCTTTCACTTTCATTTATATGGCAGCTCTACACAATCTGGCTTCTCGTCCATCTTCATGAATCTCAGCCTGGAGTCAGACATAGCAGATTCCTTCAACTTTCCATGGCTTCGTTTGGTGATAAGCTGGGAAAGTTGGTCGCAATATTTCCAGTACTGTACTTATCGGCTGCAACCTGCGTGATGATGATCATCACCGGCGGCGGGACGATGGAGCTCTTCTTCAACAAAATCTATTATGGAGAAGTTGGCAGGGCCGGGTGTGGAGCCAAGCCTCTGAGTGGGGCTGAGTGGTTCTTGGTTTTTTCAGGCTTGGCAATGGCTCTGGTTCAGTTTCCTAATTTGAATTCCATATCTTGGGTGTCTCTGATCGGCGCAATCACAGCCGTCGGCTATTGCACTCTGATATGGGTTCTTTCAATCGGCAAAGGCAGGCTCGCCGGAATATCAAATGATCCGACTCCGGTGGCTGACTTCTCCGGTGTCTTCAGTGCAATTGGAATCATCCTTCTCAGTTTTAGAGGTCACAATGTTGTGCTTGAAATACAGGTAAAAAAAAAAAAGCTTCATCATTTAGTGCTACAAAACAAGTCGAGTTTCAGAAAGACATGGATTTTGATGCAGGGGACGTTGCCTACCAATCCAAAGCATCCTTCCAAGACGACGATGTGGAAGGCGGTCATGATCTCATATCTATTAATCGCAGTCTTGTGTCTCTTTCCGATTGGTATAGCCGGATATTGGGCTTACAGCGACAAGACACTAAGCTTATTAATTATCGTCAACTCTTTGTGCGTGTTTCAAATCTACGCCATGCCAGTGTTCGATAACATGGAGAGCGGGTACACGAGCAGGAAGAAAATGCCGTGCCCGTGGTGGCTTCGCGCGGGATCGCGTCTGTTCTTCGGAGGAATGACTTACTTAGTAGCTGTTGCTTTTCCCTTTCTGGGCAGTCTAGCTCTTGTTGCTGGAGGAATTGCATTGCCCCTCACTTTTGCTTATCCATGTTTTATGTGGATATCTATCATGAAGAAGAAGGGTAGTGTCATCAATTGCCTTAACTGGCTATTTGGCTGCTTAGGTTTGCTCGTAAGCGCGCTTATTGTCGCTGCGGCCGTATGGGCTCTGGCTCGACATGGATCAGATGCAAACTTCTTCAATCCTTGA 1473 46.98 MGEILVQLSSKQELPLYQPITTNSPEIPPPVIAVNPEEAAVQSSVALHDDELNFQDSLLPLTESRTGSIYSAIFHLLSSGIGFQALLIPVSFATLGWGWGITCLSLSFIWQLYTIWLLVHLHESQPGVRHSRFLQLSMASFGDKLGKLVAIFPVLYLSAATCVMMIITGGGTMELFFNKIYYGEVGRAGCGAKPLSGAEWFLVFSGLAMALVQFPNLNSISWVSLIGAITAVGYCTLIWVLSIGKGRLAGISNDPTPVADFSGVFSAIGIILLSFRGHNVVLEIQVKKKKLHHLVLQNKSSFRKTWILMQGTLPTNPKHPSKTTMWKAVMISYLLIAVLCLFPIGIAGYWAYSDKTLSLLIIVNSLCVFQIYAMPVFDNMESGYTSRKKMPCPWWLRAGSRLFFGGMTYLVAVAFPFLGSLALVAGGIALPLTFAYPCFMWISIMKKKGSVINCLNWLFGCLGLLVSALIVAAAVWALARHGSDANFFNP 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43122069 43123845 + Bma028093.1 Bma08g00729 87556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00729 490 PANTHER LYSINE HISTIDINE TRANSPORTER-LIKE 7 53 355 - -
Bma08g00729 490 PANTHER LYSINE HISTIDINE TRANSPORTER-LIKE 7 357 485 - -
Bma08g00729 490 Pfam Transmembrane amino acid transporter protein 65 287 IPR013057 -
Bma08g00729 490 Pfam Transmembrane amino acid transporter protein 357 474 IPR013057 -
Bma08g00729 490 PANTHER OS05G0424000 PROTEIN-RELATED 53 355 - -
Bma08g00729 490 PANTHER OS05G0424000 PROTEIN-RELATED 357 485 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00729 - - - pop:18097924 479.559
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00626 Bma08g00729 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00626 Bma-Chr3:5155788 Bma08g00729 Bma-Chr8:43122069 0 dispersed
Bma08g00729 Bma-Chr8:43122069 Bma12g01087 Bma-Chr12:43166125 3.86E-72 dispersed
Bma08g00729 Bma-Chr8:43122069 Bma08g00735 Bma-Chr8:43272574 5.53E-51 proximal
Bma08g00728 Bma-Chr8:43117424 Bma08g00729 Bma-Chr8:43122069 2.98E-139 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g265 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone12ag1299 . . . . . . . Blo04g00596 . . . . . Bma03g00626 Bma08g00729 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0018176 0 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 1 5
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00729 Bma_Chr08 FPKM 5.107843 6.509602 11.251385 8.373948 4.996243 8.150497 4.187818 7.558429 5.843303 8.456858