Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00738 ATGGAGGAAACACTGAGAGAAGCCAGACGCAAAAAGGAAGAAGAAGAAGAAGACGATGAACATGAACAGGCAAAAGCCGAAGTCTGGAACTACGTATTTGGGTTCGTTGAAATGGCGGCGGTGAAGTGCGCCATTGAGTTGGGAGTAGCCGATGCCATTGAAAGAAATGGAGGCCCAATGACACTCTCGCAGCTCTCGTCGGCAGTCGGAGCCACCGTCTCCTCCTTCCAGCTCCACCGCATTATGCGGCTTCTGGTTCATCGCCGCATATTCAAACAGCTTCCCGCCTCTGATTCAGCCGCCGTAACATATGCCCAAACGCCCATTTCTAGTCTGCTGATGAAAACAGGAGAAACCAGCATGGCGCCATTGTTTCTTCTCGAATTCAGCCCCGTCATGCTTGCACCGTGGCACCACTTAAGCGCCCGTATTCTTTCTCAAGACCTCACGGCGTTTGAATCGGCTCACGGAGAAGACTTGTGGAGCTACGCGGAGGCGAACCCTGATCACAGTAAGCTGATAAACGAGGCGATGGCTTGCTCAGCGAGGGTTTCGGTGCCTGCAGTGGTCGAGGGCTGCGCTGGTTTATTTGATGGGATTAAGTCCGTCGTCGACGTGGGAGGCGGCAATGGAACTGCTCTGCGCGCTTTGGTGAAGGCGTGTCCGGGGATTCGAGGCATCAACTTTGATCTTCCCCACGTCGTGGCCGTTTCGCCGGAATCCGAAGGCGTAGAGAACGTCGGCGGCAACATGTTTGAATCTGTGCCTGAGGCTGATGCTGCTTTCCTCATGTGGGTGCTGCATGATTGGAGTGACGAAGAGTGCATAAAAATACTGAAGAAATGCAAGGAAGCAGTTCCAGAAGACAGAGGGAAGGTGATAATTGTGGAAGCGGTGATTGAAGAAGGAGAGGAGAGCAAGCTGTATGGGGCCAGATTGATGCTTGACTTGATTATGATGGCGCATACTTCCAATGGCATGGAGAGGACCCTCGAGGACTGGGCCCATCTCCTTCATCAGGCTGGATTTAGTCGTCACTCTGTCACTTCCATTCAGCTATTCAGTCTGTTATTCAGGCTTTTCCTTGATATATGTGTCTCTCTCTTCCCCAGATTGATGCTTGACTTGATTATGATGGCGCATACTTCCAATGGCATGGAGAGGACCCTCGAGGACTGGGCCCATCTCCTTCATCAGGCTGGATTTAGTCGTCACTCTGTCACTTCCATTCAAGCTATTCAGTCTGTCATTCAGGCTTTTCCTTGA 1266 51.74 MEETLREARRKKEEEEEDDEHEQAKAEVWNYVFGFVEMAAVKCAIELGVADAIERNGGPMTLSQLSSAVGATVSSFQLHRIMRLLVHRRIFKQLPASDSAAVTYAQTPISSLLMKTGETSMAPLFLLEFSPVMLAPWHHLSARILSQDLTAFESAHGEDLWSYAEANPDHSKLINEAMACSARVSVPAVVEGCAGLFDGIKSVVDVGGGNGTALRALVKACPGIRGINFDLPHVVAVSPESEGVENVGGNMFESVPEADAAFLMWVLHDWSDEECIKILKKCKEAVPEDRGKVIIVEAVIEEGEESKLYGARLMLDLIMMAHTSNGMERTLEDWAHLLHQAGFSRHSVTSIQLFSLLFRLFLDICVSLFPRLMLDLIMMAHTSNGMERTLEDWAHLLHQAGFSRHSVTSIQAIQSVIQAFP 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43398792 43400456 + Bma028107.1 Bma08g00738 87565

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00738 421 Pfam Dimerisation domain 40 86 IPR012967 GO:0046983
Bma08g00738 421 PANTHER O-METHYLTRANSFERASE 372 420 IPR016461 GO:0008168
Bma08g00738 421 Coils Coil 5 25 - -
Bma08g00738 421 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 14 356 - -
Bma08g00738 421 Gene3D Vaccinia Virus protein VP39 114 357 IPR029063 -
Bma08g00738 421 Gene3D - 10 113 IPR036388 -
Bma08g00738 421 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 369 417 IPR029063 -
Bma08g00738 421 CDD AdoMet_MTases 203 300 - -
Bma08g00738 421 Pfam O-methyltransferase domain 137 344 IPR001077 GO:0008171
Bma08g00738 421 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 118 354 IPR029063 -
Bma08g00738 421 PANTHER 3'-HYDROXY-N-METHYL-(S)-COCLAURINE 4'-O-METHYLTRANSFERASE 2-LIKE 372 420 - -
Bma08g00738 421 SUPERFAMILY Winged helix DNA-binding domain 18 116 IPR036390 -
Bma08g00738 421 PANTHER O-METHYLTRANSFERASE 14 356 IPR016461 GO:0008168
Bma08g00738 421 MobiDBLite consensus disorder prediction 1 22 - -
Bma08g00738 421 Gene3D Vaccinia Virus protein VP39 365 421 IPR029063 -
Bma08g00738 421 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 362 IPR016461 GO:0008168
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00738 K22588 ASMT; acetylserotonin O-methyltransferase, plant [EC:2.1.1.4] - tcc:18607475 432.95
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00585 Bma-Chr8:36411673 Bma08g00738 Bma-Chr8:43398792 4.96E-68 dispersed
Bma08g00738 Bma-Chr8:43398792 Bma13g01111 Bma-Chr13:44121414 1.01E-52 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g225 . . . . . . . . Cmo19g00774 . . . . . . . Cpe15g00616 Bhi05g01657 Tan02g0633 . . . . . . . . . . . . . . . . . Csa07g00139 . Cme01g01209 . . Bda15g01018 . . . . Bma08g00738 . . . Cma11g01356 Cma19g00762 . . . . . . . . . . . . . . . . . . Lsi11g01239 . Chy01g00647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000315 1 12 0 1 0 8 0 7 7 3 4 6 4 5 8 8 6 2 2 8 4 3 2 4 5 10 6 5 7 2 140
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00738 Bma_Chr08 FPKM 0.327357 0.389071 1.630372 1.61656 3.020424 2.43667 2.676207 4.496723 5.175056 4.457184