Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00739 ATGGAGGAACCCGAAGACCGGATCGCAGCGGAGTTGAAGATCGAAAAGCAGGCGAAAATGGCGGACGACGATGCAAGTATTGGATTCCTGGATCTCTTGCCTTCCGCACTGCTGGCCACTATCCTGACCAAGCTCGATGTGGCTTCCATTTGCTCAATTGCTTCTACATGCAGGACCTTCAAATCTTACGCTTCTCAGATCCTTTCCTACCTTCCCGTTTTCCATCTTCTTGAAATTACTCCAACGAAGGAATTGTTGGGTTCTCTGCTGCCACCAAATCCTTACCTTAGGAGCCTAAAGGTTGACTGTGGCCAGCTTGATGATTCAGCTATCCAGATTTTGCTTCGACCTTCTTTGCATGAACTCAGCCTGCATAATTGTGTGGATTTCAGTGGTAAATTACTTTCTGAAATCGGAGGGCGATGCAAGGGTTTGAGGTCTCTTTACTTGGGTTCGGTGGCTGGAAATAGAGGCCGAGCAGTTCACCTCTCTGATTTGGAGGAGTTACTAAAAGGGTGCTCTCAGTTAGAATCACTGATCCTGATGTTTGAGGCTTCATTATTCCTCCGTCGTGACTTTCCTAAAATTTGGGCTTTCGCATCAGAGAAACTAACATCGCTTGAGATTGGGTATATTGCTTCAGTAATGGTGACAGAACTGTTTTGGCAAGAATCGGGAATCAATCAAGTATCCTTTAATGTTGTACCTTCCATATTTCTAAACATTCAAAAACTGTGCCTTTCAGTTGATTCTATTTCTGACTCCATGGTTGATAATTTATCTAAAGCTCTGGTCAATTTATCGCATCTGGATCTTCGAGATGCTCCTTTTATAGAACCAAGAGTTTCATTTGATCTCACCAACTCTGGCCTTCTACATATCAATCATTATGGAAAACTAAAGCATCTATCATTGGTCCGAAGTCAGGAGTTTATGATTACATTCTTCAGGAGAGTGAATGATCAAGGGGTCCTCTTTCTGGCTGATAAATGTGCAAAGATTGAAAGCATATGCCTTGGTGGGTTTTGCCGTGTGACAGACACAGGGTTCAAGACGATTTTGCACTCTTGCTCTAATCTGCGCAAACTTAAGGTGTCTCATGGAACTCAGTTAACAGATATAGTTTTTCATGACATTTCTGCAACATCCCTATCTTTGGTACATATTAGCTTGAGATGGTGCAATCTCTTAACCAATCAATCTGTGATAAATTTGGCGTCGAACAGGGATCTTGAAGTCCTCGACTTGAGAAACTGCAGAAAACTAGGGGATGATTCACTTCAAGCCATCAGCTCGATTTCAAAACTGAAGATACTGCTGTTAGATGGATCTGATATTACTGATAAGGGATTGTTTTGCCTGAGATCTGGGGTAATAAACTCACTAGTTTCCTTCTCGGTTAGAGGCTGCAAAAGACTCACCTCTAAGTTCATCTCTCTTCTGTTTGAGGGCTCAACGAACTTGAAATTGCGAGAACTGGATCTATCCAATCTTCCTCACCTGTCCGATGCTGCTGTTTTACTATTGGCCAAACAGAGAATTCCAATTGTCGAACTCCGGCTCCGGCAGTGCCCCCTCATAGGTGATGCTTCAATTATGGCATTGGCCTCGATGCAGGCTGATGGGTACAGATGGTATGGTAGTAGTTTGCAGTTGTTGGATTTGTATAACTGCGGTGGGATTACACCACTTGCCTTCCGGTGGTTTAAGAACCCATATTTTCCGAAGCTGAGATGGTTGGGTGTGACGGGAAGTGTAAACAGAGATATAGTCGATGCTTTGGCTAGAAGTAGACCCTTTTTGCATGTTTCTTGCCGTGGGGAGGAACTCGGGCCCTGCCAATGGGACAAGTCAATTCCATACATGCACGAGGAGGAGGAGGAGGTGGTGGAAGACCTCGAGCAGTGGGTTTTGGAAGCTGCCCAATATATTGCCGACGAAGAAGACGAAGACGAAGACAACGAAGAAGATGAAGACTTGGAAGATGCCGAAACTGATGAAGAACCATTGGAGTAA 2016 44.25 MEEPEDRIAAELKIEKQAKMADDDASIGFLDLLPSALLATILTKLDVASICSIASTCRTFKSYASQILSYLPVFHLLEITPTKELLGSLLPPNPYLRSLKVDCGQLDDSAIQILLRPSLHELSLHNCVDFSGKLLSEIGGRCKGLRSLYLGSVAGNRGRAVHLSDLEELLKGCSQLESLILMFEASLFLRRDFPKIWAFASEKLTSLEIGYIASVMVTELFWQESGINQVSFNVVPSIFLNIQKLCLSVDSISDSMVDNLSKALVNLSHLDLRDAPFIEPRVSFDLTNSGLLHINHYGKLKHLSLVRSQEFMITFFRRVNDQGVLFLADKCAKIESICLGGFCRVTDTGFKTILHSCSNLRKLKVSHGTQLTDIVFHDISATSLSLVHISLRWCNLLTNQSVINLASNRDLEVLDLRNCRKLGDDSLQAISSISKLKILLLDGSDITDKGLFCLRSGVINSLVSFSVRGCKRLTSKFISLLFEGSTNLKLRELDLSNLPHLSDAAVLLLAKQRIPIVELRLRQCPLIGDASIMALASMQADGYRWYGSSLQLLDLYNCGGITPLAFRWFKNPYFPKLRWLGVTGSVNRDIVDALARSRPFLHVSCRGEELGPCQWDKSIPYMHEEEEEVVEDLEQWVLEAAQYIADEEDEDEDNEEDEDLEDAETDEEPLE 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43462595 43465654 + Bma028108.1 Bma08g00739 87566

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00739 671 SUPERFAMILY RNI-like 228 628 - -
Bma08g00739 671 Gene3D Ribonuclease Inhibitor 482 564 IPR032675 -
Bma08g00739 671 Pfam Leucine Rich repeat 407 431 IPR001611 GO:0005515
Bma08g00739 671 MobiDBLite consensus disorder prediction 644 671 - -
Bma08g00739 671 Gene3D - 12 67 - -
Bma08g00739 671 Gene3D Ribonuclease Inhibitor 76 476 IPR032675 -
Bma08g00739 671 ProSiteProfiles F-box domain profile. 27 73 IPR001810 GO:0005515
Bma08g00739 671 SUPERFAMILY RNI-like 84 275 - -
Bma08g00739 671 PANTHER RNI-LIKE SUPERFAMILY PROTEIN-RELATED 33 582 - -
Bma08g00739 671 PANTHER UNCHARACTERIZED 33 582 - -
Bma08g00739 671 SUPERFAMILY F-box domain 19 66 IPR036047 GO:0005515
Bma08g00739 671 Pfam F-box domain 31 67 IPR001810 GO:0005515
Bma08g00739 671 SMART LRR_CC_2 409 433 IPR006553 -
Bma08g00739 671 SMART LRR_CC_2 357 382 IPR006553 -
Bma08g00739 671 SMART LRR_CC_2 383 408 IPR006553 -
Bma08g00739 671 SMART LRR_CC_2 513 538 IPR006553 -
Bma08g00739 671 SMART LRR_CC_2 547 572 IPR006553 -
Bma08g00739 671 SMART LRR_CC_2 331 356 IPR006553 -
Bma08g00739 671 SMART LRR_CC_2 487 512 IPR006553 -
Bma08g00739 671 SMART LRR_CC_2 116 141 IPR006553 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00739 - - - mnt:21384758 872.078
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00739 Bma-Chr8:43462595 Bma08g00842 Bma-Chr8:46376692 8.61E-14 dispersed
Bma03g00621 Bma-Chr3:5124999 Bma08g00739 Bma-Chr8:43462595 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00739 Bma_Chr08 FPKM 11.54774 11.712818 14.355169 14.095012 17.609564 18.307867 18.404278 16.767233 16.140211 17.438736