Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00752 ATGAGGATTGAAAGCACAGCTTACAGACTGCGGCTGCTAGTGTCTACGAGTCGAGTCCACAACGTTTTTCAAGTCTTGATGCTGGAAAAGGAAGATTCAAGGGGTTGGGGTTTTTGTATGGAAACAAGGAGCCGTAAGCGGGCGGAGGCTACCTCAGCAGCCCCTTCTTCTTCTTCGTCTGTTCCAATTACCCGTTCAAACAAACGGTCTCGTCTTTCTGCTACTTCGTCCCCACATTCCAAACAATCTTCCCCAGCTGCTTCATCAATTTCTACTAGGTCCCGTACTTCTAGATTTCAAGAACCAACTGCTGCTGCTACTCCAATGGACTCGACTAATGAATCATCTGGGTCTCGTCGTCGTGGGAGAAACTCAGATAAGGATAATTCGGACAAGGGCAAGGAGAAAGAGCATGAAGTTGGAGTTAGAGATAGAGAAAGAGATATTGAGCGAAGCTTAGGATTGAATATTGAAGGTGGTGCTGGTGGAGACGATGATGATAACGACAGTGAGATGGGGGTTGGAATCTTGCACCAGAATTTGACTTCAGCTAGTAGTGCCCTTCAAGGGCTTCTTAGGAAGTTGGGGGCGGGTTTGGATGACTTGTTGCCTTCCTCCGCTATTGGCTCTGCTTCAAGTTCCCAACAGAGCGGTCGGCTCAAGAAGATCCTTGCAGGGTTGAGAGCAGATGGGGAAGAAGGTAGGCAGGTGGAGGCACTGACACAACTTTGTGAGATGCTTTCTATTGGGACCGAGGAATCACTGAGTACATTTTCTGTTGATTCTTTTGTTCCTGTCCTGGTTGGGTTGCTTAATCACGAGAGCAATCCTGATATCATGCTTCTGGCCGCCAGGGCACTAACTCATCTTTGTGAAGTGCTTCCTTCATCTTGTGCTGCGGTTGTGCATTATGGTGCAGTTTCATGTTTCTGTGCTAGGTTGTTGACAATAGAGTACATGGACTTGGCTGAACAGTCATTGCAGGCTCTAAAGAAGATATCGCAGGAACACCCAACTGCCTGTCTGCGAGCTGGTGCTCTAATGGCTGTGCTTTCTTATCTGGATTTCTTCTCCACAGGAGTTCAGAGAGTAGCATTATCTACTGCTGCAAACATGTGTAAAAAGCTTTCTTCAGATGCAGCTGACTTTGTTATGGAAGCTGTGTTGGAGCATGCTTCAGTTTGTTTGACTCGGATTGCTGAAGCATTTGCATCATCTCCTGATAAATTAGATGAATTGTGTAATCATGGACTAGTGGCTCAAGCTGCCTCACTTATATCTGCCAACAATTCTGGAGGTGGTCAGGCATCGCTCAGCATACCAACTTATACGGGATTAATTAGACTTCTTTCCACCTGTGCAAGTGGGTCCCCATTAGGGACTAAAACGCTTCTTCTTCTTGGCATCAGTGGTATTCTCAAAGATATTCTTTCTGGTTCTGGCACAGCTGCAAATGCAACTGTTTCACCTGCTTTAAGTAGACCGCCAGAGCAGATTTTTGAAATTGTCAATCTAGCAAATGAGCTTCTACCACCACTACCCCAAGGAACCATATCCCTTCCTGCCAGTTTTTTGTTTGTGAAAGGATCTGCTATGAAAAAGTCTTGTGCTAGTGGTTCTGGAAAACAAGAAGAAACAAATTGTTCAACTCCTGAGGTCTCCGCTCGTGAGAAACTCTTAAATGATCAACCTGAACTTCTTCAACAATTTGGAATGGATCTTCTTCCAATTTTAATACAGATCTACGGGTCAAGTGTCAATGGTCCTGTTCGCCACAAATGTCTCTCCATTATTGGGAAATTGATGTACTTCAGTTCTTCAGAGATGATCCAGGCTCTATTAAATGTAGCAAATATATCAAGTTTCTTAGCTGGTGTTTTAGCATGGAAAGATCCTCATGTCTTGATTCCTGCTCTTCAAATTGCTGAAATTCTTATGGAAAAGCTTCCAGAAACTTTTGCAAAGATGTTTGTTAGAGAAGGCGTGGTCCATGCAGTGGACCAACTTGTCTTAGTTAATAACCAAAATAATACTCCTACCCAAGTGTCCTCGACCGAAAAAGATAATGATCCTGGAACTGGAACATCATCTCGTACTCGGCGTTATAGGCGTCGTAACAGTAATGTAAATGCAGATGTAAGTACATTGGATGAGTCTAAGAATAGTTCTGGAAATGTTGGTTCACCTCCAAGCTCAGTAGAAGTTCCATCTATTAATTCCAATATTCGGTTGGCGGTTAGTGGTTGTGCTATCGCATTCAAGGACAAGTACTTCCCTTCAGATCCTGGAGCCACCGAAGTTGGAGGAACTGACGATCTTTTGCATTTGAAGAATCTTTGCAGGAAGCTGAATTTAGGTATTGATGACCAACGTGCAAAAGCAACAGGGAAGTCAAAAGCCTCTGAGTCTCACTTGGTTGATAACTCTGCGAATAAGGAAGAATACCTATCTGGTGTTATATCAGAGATGCTAGTTGAATTTGGCAAAGGGGACGGTGTATCCACTTTTGAGTTTATTGGAAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGTGGATACTTTTTGAAGGAGAAAATTTCAGATGCTAATCTGCCAAAGCTTCGTCAGCAGGCACTTAAAAGATTCAAATCATTTGTTGCTGTAGCACTTCCTTCCAATGCTTCTGAGGGTACTTTGGCTCCCATGGCTGTTTTGGTTCAGAAACTTCAAAATGCTTTGTCTTCCTTGGAGCGTTTCCCGGTTGTCTTAAGGCAGTCATCTAGGTCATCTAGTGGAAGTGGTCGTCTTTCCTCTGGATTAAGTGCATTATCTCAGCCTTTTAAGTTGCGTCTCTGTCGATCTCACGGAGAGAAAAATCTCCGTGATTATTCTTCAAATGTTGTGCTCATTGATCCCTTGGCAAGTTTAGCAGCAGTTGAAGAGTTTCTTTGGCCTCGAGTGCAGCGAGGTGATGCTGGTCAAGAGTCTGCATTATCTACTGGAAATTCAGAGTTGGGGACCACTTCTGCAGTGGCTGGGGCTTCATCTCCATCCACAACCACTCCTGCTTCAACAACTCGTCGTCACTCTACTAGGTCTAGATCCTCAGTGAACATAGGAGATGGAGCTAAGAAGGAATTATCTGAAGAGAAGAGCACAAGTTCATCTAAAGGAAAAGGTAAGGCTGTTATGAAGCCTGCTCAGGAGGAAGCAAGAGGGCCTCAAACTAGGAATTCTTCTCGTAGAAAAGCAGCTATAGACAAGGATGCTCTGAAACCTGTTAATGGGGAGACTTCGTCTGAGGACGAGGAATTGGATGCATCTTTTGTTGAGATTGATGATGCATTAGTTATTGAAGATGATGATATCTCAGACGACGAAGAAGATGATGATCATGATGAGGTCCTAAGAGCTGAGTCCCTTCCCGTTTGTATACCTGAAAGAGTACATGACGTAAAGTTGGGTGATGCAGCTGAGGAAAGTAATGTTGCTCCAGTAACTGCCGATAGCCTGGTCAATCCTGCTTCCGGTTCAAGTAGCAGAATTGCTGCAGTTAGGGGCTCAGATTCTAATGATCATAGGAGTAGCAATTCTTATGGTTCACGGGGTGCAATGTCATTTGCCGCTGCTGCTATGGCTGGGCTTCGATCTGCTAATGGTAGAGGTTTTAGAGGAGGTCGAGACAGGCATGGTCGTCCTCTCTTTGGTAGCTCTAGTGATCCACCAAAGTTGATCTTTACTTCTGGTGGGAAGCAACTTAATAGGCATTTAACCATTTACCAGGCTATCCAGAGACAACTTGTTTTGGATGAGGATGACGATGAGAGATATGCTGGTAGTGATTTCTTGTCTAGTGATGGAAGTAGGCTATGGAGTGACATATATACTATTACATACCATAGAGCTGAAAATCAAGCTGATAGAACGTCTACTGGGGGATCCAATACTTCTGCCGCATCAAAATCTACCAAATCTGGATCTACTTCCAATTCTAACTCTAATTTGCAGAGGGTGTCTCTTCTAGATAGCATTTTGCAGGCGGAGCTTCCTTGTGATATGGAAAAGTCTAATCCTACTCATAGTATTTTGGCATTGTTGCGTGTTTTAGACACTTTGAACCAACTTGCACCCCGTTTGAGAGCGCAGATAGTTTCTGATCGTTTTTCAGAGGGTAAACTCTTCAGTCTTGATGAGCTAAGTGCTGCTGGTGCAAGGGTCCTTCCTGAGGAGTTCATTAATAGCAAGCTTACTCCTAAATTAGCTCGACAAATTCAAGATGTCCTTGCATTATGCAGCGGAAGTCTCCCTTCATGGTGTTATCAGTTGACGAAAGCTTGTCCATTTTTGTTTCCTTTTGAAACCCGGCGACAGTATTTCTATTCAACTGCTTTTGGGTTATCACGTGCATTGTATCGCCTTCAGCAGCAGCAGGGTGCTGATGGTCTTGGAATAGGAAGTGAAAGAGAGGTGAGGGTTGGGAGGTTACAGCGCCAAAAAGTTCGTGTATCTAGAAACCGTATTTTAGATTCTGCTGTGCAAGTAATGGAAATGTATTCTAGTCAAAAGGTAATGCTGGAAGTAGAGTATTTTGGTGAAGTTGGAACTGGGTTGGGTCCTACACTTGAGTTTTATACACTTATAAGTCATGACCTACAAAAAGCTAGTCTTGGAATGTGGAGATCAAATTCCTCATTTGATAGATCTATGGAAATTGATGGGGATGAACTGAAAGATGAAAAAATCAACTCTGCTGGATTTGGTTCCATGGTAAGCAATTCAGACTCCATACATGCTCCACTTGGATTGTTCCCTCGCCCCTGGTCTCCAAATTCTGATGTTTCAAATGGTAGCCAATTTTCTAAAGTAATAGAGTATTTCCGATTAGTTGGTCGTGTGATGGCCAAAGCACTTCAGGATGGGAGATTATTGGACCTTCCACTGTCAACAGCATTCTATAAGCTGGTGCTTGGTCAAGAGCTCGATTTGCATGATATTCTTTCCTTCGATACTGAATTTGGCAAGATTTTGCGAGAGTTGCATGTACTTGTTTGTCGGAAACAATACCTAGAATCAACAGGTGGTGATAATCATGAAGCAATCGTCAACTTGCGTTTTCGTGGGACTTCAATTGAGGACCTGTACTTGGATTTTTCGCTTCCTGGTTACCCAGATTACATTTTGAAGCAGGGAGATGAAAATGTCAATATCAACAACCTGGAGGAGTACGTGTCCTTGGTAGTTGATGCAACTGTCAAGACTGGAATCATGCGGCAAATTGAAGCATTTAGAGAAGGGTTTAACCAGGTCTTTGACATCACTTCGTTGCAAGTATTTACTCCAAATGAGCTAGATCATTTGCTTTGTGGTCGGCGAGAGTTATGGGAGGCTGACACCCTTTCTGATCACATAAAATTTGATCATGGCTACACTGCAAAGAGCCCTGCCATAGTAAATTTACTCGAGATCATGGGAGAGTTCACTCCTGAGCAGCAGCGAGCCTTTTGCCAGTTTGTTACTGGTGCACCTCGGCTTCCTCCTGGTGGGTTGGCTGTTCTGAACCCAAAACTTACAATCGTGAGAAAGCATTCTTCAACCGCTACTAATGTTACAACTAATGGAACTGGGTTGTCAGAATCAGCAGATGATGACTTGCCGAGTGTTATGACTTGTGCCAATTACCTGAAGCTTCCTCCTTACTCAACTAAGGAAATTATGTTCAAAAAATTAACCTATGCGATCAGTGAAGGGCAGGGATCTTTTGATCTCTCGTGA 5757 43.56 MRIESTAYRLRLLVSTSRVHNVFQVLMLEKEDSRGWGFCMETRSRKRAEATSAAPSSSSSVPITRSNKRSRLSATSSPHSKQSSPAASSISTRSRTSRFQEPTAAATPMDSTNESSGSRRRGRNSDKDNSDKGKEKEHEVGVRDRERDIERSLGLNIEGGAGGDDDDNDSEMGVGILHQNLTSASSALQGLLRKLGAGLDDLLPSSAIGSASSSQQSGRLKKILAGLRADGEEGRQVEALTQLCEMLSIGTEESLSTFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCEVLPSSCAAVVHYGAVSCFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLSSDAADFVMEAVLEHASVCLTRIAEAFASSPDKLDELCNHGLVAQAASLISANNSGGGQASLSIPTYTGLIRLLSTCASGSPLGTKTLLLLGISGILKDILSGSGTAANATVSPALSRPPEQIFEIVNLANELLPPLPQGTISLPASFLFVKGSAMKKSCASGSGKQEETNCSTPEVSAREKLLNDQPELLQQFGMDLLPILIQIYGSSVNGPVRHKCLSIIGKLMYFSSSEMIQALLNVANISSFLAGVLAWKDPHVLIPALQIAEILMEKLPETFAKMFVREGVVHAVDQLVLVNNQNNTPTQVSSTEKDNDPGTGTSSRTRRYRRRNSNVNADVSTLDESKNSSGNVGSPPSSVEVPSINSNIRLAVSGCAIAFKDKYFPSDPGATEVGGTDDLLHLKNLCRKLNLGIDDQRAKATGKSKASESHLVDNSANKEEYLSGVISEMLVEFGKGDGVSTFEFIGSGVVAALLNYFSCGYFLKEKISDANLPKLRQQALKRFKSFVAVALPSNASEGTLAPMAVLVQKLQNALSSLERFPVVLRQSSRSSSGSGRLSSGLSALSQPFKLRLCRSHGEKNLRDYSSNVVLIDPLASLAAVEEFLWPRVQRGDAGQESALSTGNSELGTTSAVAGASSPSTTTPASTTRRHSTRSRSSVNIGDGAKKELSEEKSTSSSKGKGKAVMKPAQEEARGPQTRNSSRRKAAIDKDALKPVNGETSSEDEELDASFVEIDDALVIEDDDISDDEEDDDHDEVLRAESLPVCIPERVHDVKLGDAAEESNVAPVTADSLVNPASGSSSRIAAVRGSDSNDHRSSNSYGSRGAMSFAAAAMAGLRSANGRGFRGGRDRHGRPLFGSSSDPPKLIFTSGGKQLNRHLTIYQAIQRQLVLDEDDDERYAGSDFLSSDGSRLWSDIYTITYHRAENQADRTSTGGSNTSAASKSTKSGSTSNSNSNLQRVSLLDSILQAELPCDMEKSNPTHSILALLRVLDTLNQLAPRLRAQIVSDRFSEGKLFSLDELSAAGARVLPEEFINSKLTPKLARQIQDVLALCSGSLPSWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALYRLQQQQGADGLGIGSEREVRVGRLQRQKVRVSRNRILDSAVQVMEMYSSQKVMLEVEYFGEVGTGLGPTLEFYTLISHDLQKASLGMWRSNSSFDRSMEIDGDELKDEKINSAGFGSMVSNSDSIHAPLGLFPRPWSPNSDVSNGSQFSKVIEYFRLVGRVMAKALQDGRLLDLPLSTAFYKLVLGQELDLHDILSFDTEFGKILRELHVLVCRKQYLESTGGDNHEAIVNLRFRGTSIEDLYLDFSLPGYPDYILKQGDENVNINNLEEYVSLVVDATVKTGIMRQIEAFREGFNQVFDITSLQVFTPNELDHLLCGRRELWEADTLSDHIKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKHSSTATNVTTNGTGLSESADDDLPSVMTCANYLKLPPYSTKEIMFKKLTYAISEGQGSFDLS 1918
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 43967032 43983882 - Bma028127.1 Bma08g00752 87579

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00752 1918 Gene3D Hect, E3 ligase catalytic domains 1433 1680 - -
Bma08g00752 1918 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 83 1918 - -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 49 115 - -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 1301 1328 - -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 1070 1094 - -
Bma08g00752 1918 Gene3D - 208 515 IPR011989 -
Bma08g00752 1918 Gene3D Hect, E3 ligase catalytic domain 1789 1916 - -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 47 173 - -
Bma08g00752 1918 CDD HECTc 1493 1913 IPR000569 GO:0004842
Bma08g00752 1918 MobiDBLite consensus disorder prediction 989 1108 - -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 1164 1194 - -
Bma08g00752 1918 Gene3D - 555 679 IPR011989 -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 676 696 - -
Bma08g00752 1918 SMART hect_3 1506 1918 IPR000569 GO:0004842
Bma08g00752 1918 MobiDBLite consensus disorder prediction 989 1033 - -
Bma08g00752 1918 ProSiteProfiles HECT domain profile. 1516 1918 IPR000569 GO:0004842
Bma08g00752 1918 MobiDBLite consensus disorder prediction 116 153 - -
Bma08g00752 1918 Pfam HECT-domain (ubiquitin-transferase) 1541 1918 IPR000569 GO:0004842
Bma08g00752 1918 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 83 1918 IPR045322 GO:0006511|GO:0061630
Bma08g00752 1918 SUPERFAMILY ARM repeat 219 670 IPR016024 -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 676 735 - -
Bma08g00752 1918 MobiDBLite consensus disorder prediction 708 735 - -
Bma08g00752 1918 SUPERFAMILY Hect, E3 ligase catalytic domain 1486 1911 IPR035983 GO:0004842
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00752 K10590 TRIP12; E3 ubiquitin-protein ligase TRIP12 [EC:2.3.2.26] - zju:107427509 2756.09
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00607 Bma08g00752 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00619 Bma-Chr4:5881197 Bma08g00752 Bma-Chr8:43967032 3.56E-101 dispersed
Bma04g01608 Bma-Chr4:52012018 Bma08g00752 Bma-Chr8:43967032 2.18E-23 dispersed
Bma08g00752 Bma-Chr8:43967032 Bma13g01122 Bma-Chr13:44317846 5.39E-33 dispersed
Bma04g01228 Bma-Chr4:35668398 Bma08g00752 Bma-Chr8:43967032 1.94E-62 transposed
Bma05g00529 Bma-Chr5:26837728 Bma08g00752 Bma-Chr8:43967032 1.46E-68 transposed
Bma08g00849 Bma-Chr8:46500040 Bma08g00752 Bma-Chr8:43967032 3.77E-46 transposed
Bma03g00607 Bma-Chr3:4996965 Bma08g00752 Bma-Chr8:43967032 1.14E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g154 . . . . . Bpe12g00120 . . . . Cma02g00257 Cma20g00754 . Car20g00655 . . . . . . . . . . . . . . . . . . . . Cone10ag1234 . . Chy11g00258 . Blo04g00566 Blo13g00505 Bda15g01035 . Bpe15g00815 . Bma03g00607 Bma08g00752 Sed01g0197 Cmo02g00253 Cmo20g00750 . . . . Cpe16g00315 Cpe05g01375 Bhi10g01854 Tan05g1142 Cmetu11g0032 . Hepe08g0290 . . Cla02g01165 Cam02g1242 Cec02g1251 Cco02g1292 Clacu02g1224 Cmu02g1192 Cre02g1504 . Csa02g01389 . Cme11g00383
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003449 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 2 2 2 1 1 3 4 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00752 Bma_Chr08 FPKM 3.736469 3.361521 1.479196 1.705704 0.653473 1.110002 1.458469 1.923679 1.378013 1.775505