Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00766 ATGGGGAATGGAGATTTTGGTGAAGGAGGAGGAGGTTACAGTAGGAAAGCTAGCCCTGGTAAAGCAACCATTCTGGCTCTTGGCAAGGCTTTTCCCCACCAGCTTGTCATGCAGGAGTACCTCGTTGATGGCTACTTCAAAAACACCAACTGCGATGATCCTGACCTCAGGCAGAAGCTCACCCGACTCTGCAAAACGACAACAGTGAAAACCAGATACGTTGTGATGTCAGAGGAGATTCTAAAGCAATATCCAGAGCTCGCCATTGAAGGCCGACCAACAGTGAAGCAAAGGCTCGACATCTGCAATATCGCAGTCACGGAGATGGCCGTCGAAGCTTCAAAAGCTTGCATCAAGAACTGGGGAAGGCCAGTTTCAGAGATAACCCACCTAGTCTACGTCTCTTCCAGCGAAGTCCGACTACCCGGCGGCGATCTCTATTTAGCCACTGGCCTCGGCCTCAGTCCCGATACTCAACGGGTAATGCTATACTTTATGGGCTGCTCCGGTGGAGTCGCTGGCCTCCGACTGGCAAAAGATATCGCCGAGAATAATCCCGGCAGTCGAGTTCTCCTCACCACATCCGAAACCACCGTTATAGGGTACAAACCGCCGAGTGCTCAACGGCCTTATGATCTCGTCGGAGTGGCCCTCTTCGGCGATGGTGCCGGAGCAATGGTGATCGGTTCGGACCCGGTAGTAAATATCGAGCGTCCTCTTTTTGAACTTCACACCGCGATTCAGCAGTTCTTGCCGAACACGGAGAAAATTATAGACGGCCGACTGACGGAAGAGGGAATTAGTTTCAAGCTAGATAAGGAGCTTCCCCACATCATAGAAGACAACATCGAAAAATTCTGTGACGACTTAATGGGAGTGGTCGGGTTCAACGGAAAGGAATATAACGAGCTATTTTGGGCAGGTCCATCCGGGAGGGCCGGCGATATTGAACAGGTTGGAAAAGCGGCTGGATCTGTCGCCGGAAAAGCTGAACGCGAGTCGGCGGGCTCTGATGGACTACGGGAATGCGAGCAGCAATACGATTGTGTATGTGCTGGAGTACATGATAGAAGAGAGCTTGAAGATGAAGAAGGAAAGAGATGA 1104 51.36 MGNGDFGEGGGGYSRKASPGKATILALGKAFPHQLVMQEYLVDGYFKNTNCDDPDLRQKLTRLCKTTTVKTRYVVMSEEILKQYPELAIEGRPTVKQRLDICNIAVTEMAVEASKACIKNWGRPVSEITHLVYVSSSEVRLPGGDLYLATGLGLSPDTQRVMLYFMGCSGGVAGLRLAKDIAENNPGSRVLLTTSETTVIGYKPPSAQRPYDLVGVALFGDGAGAMVIGSDPVVNIERPLFELHTAIQQFLPNTEKIIDGRLTEEGISFKLDKELPHIIEDNIEKFCDDLMGVVGFNGKEYNELFWAGPSGRAGDIEQVGKAAGSVAGKAERESAGSDGLRECEQQYDCVCAGVHDRRELEDEEGKR 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 44672067 44673291 - Bma028143.1 Bma08g00766 87593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00766 367 SUPERFAMILY Thiolase-like 17 235 IPR016039 GO:0016746
Bma08g00766 367 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 14 312 IPR011141 GO:0009058|GO:0016747
Bma08g00766 367 Pfam Chalcone and stilbene synthases, N-terminal domain 15 232 IPR001099 -
Bma08g00766 367 CDD CHS_like 22 322 - -
Bma08g00766 367 Pfam Chalcone and stilbene synthases, C-terminal domain 242 313 IPR012328 -
Bma08g00766 367 Gene3D - 13 239 IPR016039 GO:0016746
Bma08g00766 367 SUPERFAMILY Thiolase-like 219 305 IPR016039 GO:0016746
Bma08g00766 367 Gene3D - 240 335 IPR016039 GO:0016746
Bma08g00766 367 PANTHER BNAA09G41780D PROTEIN 14 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00766 - - - tcc:18607619 522.316
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00766 Bma-Chr8:44672067 Bma05g01278 Bma-Chr5:52112115 1.58E-79 dispersed
Bma08g00766 Bma-Chr8:44672067 Bma02g01028 Bma-Chr2:51707631 1.18E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g95 . . . . . Bpe12g00109 . . . Cmo11g01722 . . . . . Cpe04g00573 Cpe15g00577 . . . . . . . Cla02g00450 Cam02g0458 Cec02g0457 Cco02g0476 Clacu02g0459 Cmu02g0454 Cre02g0788 . . . . . . . . Blo04g00551 Blo13g00525 Bda15g01045 . . . . Bma08g00766 . . . Cma11g01399 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002086 1 1 2 2 1 2 2 2 2 2 2 2 4 2 2 4 2 4 3 2 2 2 2 2 2 2 2 2 2 2 64
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00766 Bma_Chr08 FPKM 9.573644 10.010181 35.191025 27.499468 9.974445 9.478223 8.632183 33.863228 39.406078 35.284668