Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00782 ATGAGTTCAGACAGCAGGAGTCGGAGCAGGAGCAGGAGCCCTCAGGATCGTAAGATCCGTTCTGATCGCTTTTCATATCGTGATGCACCTTACAAGAGAGACTCTCATCGGGGTTTCAGTAGGGACAATCTTTGCAAGAACTGTAAGAGACCAGGTCACTTTGCTAGAGAATGCCCAAATGTCGCAGTTTGTCACAACTGTGGTCTTCCTGGGCACATTGCATCTGAATGTACGACAAAGTCACTTTGTTGGAACTGTCGAGAACCTGGTCACGTGGCGAGCAGCTGTCCAAACGATGGTATCTGCCACACCTGTGGAAAGGCAGGGCACCGAGCCAAAGATTGCACCGCCCCTGTTTTGTTGGACAAAAAACCTGCAGACCATGCTACGGCTCATGCTCATGCTCATGCTCATGCTCATGCTCATCCTAATAAACATGAAGAAGATGCGGGGACTTTTCCTCAGCCTCGAACTTACAAACCAACCCATTCTACAGGGGATGAGTTCAAAAGGAATGCGAGCCTTGTTGCATCAGGTGTAGCCAGGAATGTGAGTAGAGTCTGCAACCACATAAAAGAGAGCCTCGATGACATTCTCTACCCTTACAGGAGGCGACCTAAATAG 624 49.2 MSSDSRSRSRSRSPQDRKIRSDRFSYRDAPYKRDSHRGFSRDNLCKNCKRPGHFARECPNVAVCHNCGLPGHIASECTTKSLCWNCREPGHVASSCPNDGICHTCGKAGHRAKDCTAPVLLDKKPADHATAHAHAHAHAHAHPNKHEEDAGTFPQPRTYKPTHSTGDEFKRNASLVASGVARNVSRVCNHIKESLDDILYPYRRRPK 207
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45138090 45144805 + Bma028163.1 Bma08g00782 87609

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00782 207 MobiDBLite consensus disorder prediction 1 35 - -
Bma08g00782 207 PANTHER OS10G0545300 PROTEIN 3 121 - -
Bma08g00782 207 ProSiteProfiles Zinc finger CCHC-type profile. 64 77 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 Gene3D - 82 118 - -
Bma08g00782 207 MobiDBLite consensus disorder prediction 127 167 - -
Bma08g00782 207 ProSiteProfiles Zinc finger CCHC-type profile. 45 60 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 PANTHER - 3 121 - -
Bma08g00782 207 Pfam Zinc knuckle 63 78 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 Pfam Zinc knuckle 101 116 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 Pfam Zinc knuckle 83 98 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 Pfam Zinc knuckle 44 60 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 Gene3D - 4 81 - -
Bma08g00782 207 SUPERFAMILY Retrovirus zinc finger-like domains 81 118 IPR036875 GO:0003676|GO:0008270
Bma08g00782 207 SUPERFAMILY Retrovirus zinc finger-like domains 36 80 IPR036875 GO:0003676|GO:0008270
Bma08g00782 207 SMART c2hcfinal6 82 98 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 SMART c2hcfinal6 63 79 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 SMART c2hcfinal6 101 117 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 SMART c2hcfinal6 44 60 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 ProSiteProfiles Zinc finger CCHC-type profile. 83 98 IPR001878 GO:0003676|GO:0008270
Bma08g00782 207 ProSiteProfiles Zinc finger CCHC-type profile. 102 115 IPR001878 GO:0003676|GO:0008270
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00782 K09250 CNBP; cellular nucleic acid-binding protein - jre:108999359 242.276
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00573 Bma08g00782 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00782 Bma-Chr8:45138090 Bma13g00826 Bma-Chr13:33125334 3.90E-09 dispersed
Bma03g00572 Bma-Chr3:4783012 Bma08g00782 Bma-Chr8:45138090 6.23E-36 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g39 . . . . . Bpe12g00094 . . Cmo19g00702 . . . . . . Cpe04g00102 Cpe15g00562 Bhi05g01259 . . . . . . Cla02g00487 Cam02g0496 Cec02g0497 Cco02g0502 Clacu02g0500 Cmu02g0495 Cre02g0828 . . . . . Csa07g00035 . Cme01g01346 Blo04g00539 Blo13g00534 Bda15g01066 Bda14g00579 Bpe15g00842 . Bma03g00573 Bma08g00782 . . . . Cma19g00691 . . . . . . . . . . . . . . . . . . . . Chy01g00746 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004531 3 4 2 1 2 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00782 Bma_Chr08 FPKM 14.653226 15.048435 4.956841 4.963029 29.628096 40.060459 35.727371 4.473058 6.503365 7.599178