Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00788 ATGAAGAACTCCGCCGCTTTCATCAACGCTGTCGAGGTGGTTTCGGCTCCCGACGGCTTGGTCGCGGACACCAGTGCAGTTCTTTCCCCGGTTGGTCAATATCACGGCCTATCCAGCCATGGTTTCCAGACCCTTTACAGGATCAATATGGGAGGTCCGCTAATCACCTCCAGAAACGACTCTCTCGGACGGATATGGCTGCCGGACGAACCTTATATTAAGGCCAAAAATTTCGGACGAAGTGTCACTGTTCAGACCAGTACCATCAAGTATCAGGAAGGACAGGAACAGCTAGGGGCGTTGATTGCGCCTCAAAGTGTCTATGCAAGTGCAATTCGAATGGCCGATGCCGTTGTAGATCTACCAAACTTCAACGTCACGTGGAATTTCGAAGCCGATCCTTCATTCGCATATCTAGTTCGGCTCCATTTTTGCGACATTGTGAGCAAATCACTAAACGATCTCTACTTCGACGTTTATATCAACGGGAATGCGGCAATTACAGACTTGGATTTGTCGCACTCGTTGGGAGGCCTGTCGATCGCATACTACACGGACATTCTGGTCAATGCTTCGTCGGTTTCCAATGGAGTTCTCACAGTTCAGATCGGACCGTCCAAGCTCAGCACCGGCGACGTCAATGCCATTTTGAACGGTCTTGAAGTCTTAAAAATGAGCAACTCGGTGGATAGTTTAGATGGAGAGTTTGGCGTCGATGGGAAATCTGCCGCCGGTTCCAACCGTGGGACAGTGGCGGCGGTTGGGTTTGCGATGATGTTCGGAGCCTTCGTCGGGCTTGGAGCTATGGTGATCAAATGGCACAAGAGGCCACAAGATTGGCAGAAGAGAAACAGCTTTTCTTCATGGCTGCTTCCCGTCCATGCAGGCGATACGAGCTTTATGACGAGCAAAAGCTCGTACGGATCGCACAAAACCAATATTTACTCGTCGACTCTAGGACTCGGAAGGTTCTTTTCGTTTGCAGAGTTGCAGGAAGCGACCAAGAACTTTGACTCCAACGAAATCATCGGCGTCGGAGGATTCGGTAACGTCTATCTCGGAGTGATCGACGAGGGGACTAAAGTTGCAGTCAAGCGAGGAAATCCTCAGTCGGAGCAAGGAATTACCGAATTCGAGACGGAAATTCAGATGCTCTCGAAGCTCAGACATCGGCATTTGGTTTCTCTGATCGGCTACTGCGACGAGAACTCAGAAATGATCTTAGTTTATGAGTATATGTCTAATGGACCTTTCAGAGACCATTTGTACGGAAAGGACTTGCCCCCACTTTCATGGAAGCAGAGGCTGGAAATCTGCATCGGGGCGGCGCGTGGGCTCCACTACCTTCACACCGGCACGGCACAAGGCATCATTCACCGAGACGTAAAGACGACGAACATCTTGCTCGACGATAACTTCACCGCCAAGGTGGCCGATTTTGGGCTGTCGAAGGATACACCGATGGGGCAAGGCCACGTAAGCACTGCCGTGAAGGGAAGCTTTGGATACTTGGATCCGGAGTATTTCCGGCGGCAGCAGTTGACAGATAAATCAGATGTTTACTCATTTGGGGTGGTTCTGCTCGAGGTGCTTTGTGTCCGGCCGGCGATTAACCCGTCTTTGCCGAGGGAACAAGTGAATTTGGCTGATTGGGCTATGCAGTGGAAGAGGAAGGGTCTGTTGGATAAAATAATGGATCCTTTTCTTGTCGGCGCTATCAATCCTGAATCCATGAAGAAGTTTGCAGAAGCTGCAGAGAAGTGTTTGGCTGAATATGGAGTTGACAGACCCACCATGGGAGATGTGCTGTGGAATTTGGAGTATGCTTTGCAGCTTCAAGAGGCTTTCACGCAGGGCCAAACGGAGGACGAGAGCAAGTCCTCTGCAACAATTTCAGTTTCCGGCGGTGATTCTACAGTGGAGAATTCTCCCGCTTCTTCTACACCGGAAGAGAACAAGGCTTCTTCTTCTACTCCAGAAGAGAACAAGGCTTCTGAGGTTCAAGCCATTAATGAACACTCTGGAACTGCAATGTTTGCGCAGTTTGCTAATCTCAGCGGTCGGTAA 2067 50.12 MKNSAAFINAVEVVSAPDGLVADTSAVLSPVGQYHGLSSHGFQTLYRINMGGPLITSRNDSLGRIWLPDEPYIKAKNFGRSVTVQTSTIKYQEGQEQLGALIAPQSVYASAIRMADAVVDLPNFNVTWNFEADPSFAYLVRLHFCDIVSKSLNDLYFDVYINGNAAITDLDLSHSLGGLSIAYYTDILVNASSVSNGVLTVQIGPSKLSTGDVNAILNGLEVLKMSNSVDSLDGEFGVDGKSAAGSNRGTVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPVHAGDTSFMTSKSSYGSHKTNIYSSTLGLGRFFSFAELQEATKNFDSNEIIGVGGFGNVYLGVIDEGTKVAVKRGNPQSEQGITEFETEIQMLSKLRHRHLVSLIGYCDENSEMILVYEYMSNGPFRDHLYGKDLPPLSWKQRLEICIGAARGLHYLHTGTAQGIIHRDVKTTNILLDDNFTAKVADFGLSKDTPMGQGHVSTAVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLLEVLCVRPAINPSLPREQVNLADWAMQWKRKGLLDKIMDPFLVGAINPESMKKFAEAAEKCLAEYGVDRPTMGDVLWNLEYALQLQEAFTQGQTEDESKSSATISVSGGDSTVENSPASSTPEENKASSSTPEENKASEVQAINEHSGTAMFAQFANLSGR 688
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45273024 45275090 - Bma028169.1 Bma08g00788 87615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00788 688 PANTHER BNAC03G60370D PROTEIN 3 654 - -
Bma08g00788 688 SUPERFAMILY Protein kinase-like (PK-like) 321 604 IPR011009 -
Bma08g00788 688 Gene3D - 42 227 - -
Bma08g00788 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 457 469 IPR008271 GO:0004672|GO:0006468
Bma08g00788 688 Gene3D Transferase(Phosphotransferase) domain 1 413 634 - -
Bma08g00788 688 PANTHER OS07G0166700 PROTEIN 3 654 IPR045272 GO:0004714|GO:0006468
Bma08g00788 688 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Bma08g00788 688 Pfam Protein tyrosine and serine/threonine kinase 340 535 IPR001245 GO:0004672|GO:0006468
Bma08g00788 688 ProSiteProfiles Protein kinase domain profile. 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00788 688 Pfam Malectin-like domain 3 224 IPR024788 -
Bma08g00788 688 CDD STKc_IRAK 343 607 - -
Bma08g00788 688 SMART serkin_6 337 609 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g00788 688 MobiDBLite consensus disorder prediction 618 673 - -
Bma08g00788 688 Gene3D Phosphorylase Kinase; domain 1 298 412 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00228 Bma-Chr8:2796119 Bma08g00788 Bma-Chr8:45273024 0 dispersed
Bma08g00788 Bma-Chr8:45273024 Bma14g00283 Bma-Chr14:3579446 0 dispersed
Bma10g00250 Bma-Chr10:2304299 Bma08g00788 Bma-Chr8:45273024 2.75E-50 transposed
Bma09g00183 Bma-Chr9:7050748 Bma08g00788 Bma-Chr8:45273024 5.52E-59 transposed
Bma03g00562 Bma-Chr3:4676900 Bma08g00788 Bma-Chr8:45273024 0 wgd
Bma08g00312 Bma-Chr8:4637473 Bma08g00788 Bma-Chr8:45273024 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66672 PF07714 PK_Tyr_Ser-Thr 1.30E-45 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00788 - - jre:108986963 1100.5