Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00792 ATGAACAGAGCCTCGACGGAGATGCTGCACTGCCTCAGCACCACCGGAATTTTTGCTGACACGACCGTCTTGGAGAGACAGACTTCCCGCCAAAAAAGGTACCATGACCAGCTTCCCCTCCACCACCTCCATGAGTACTCTACCTACTCTTTGCCGGCGTCAATTCAGGCTGCTCAGGCCCCTAATTCGCTAACGAGTGGCGGAGAAACGGAGCTCAGCGAGGTTAAGCGAGACATGGGTTTGGAAAACGTGTGGTCGGGATTGGGAAAGTTTGAGATTCCGACCGTGGGTTTTAGGTCTGGACTAGAACTAAATCCTACAATTTCAAGAACTTCCAGCAGTCCTCCGGTTATAATGGAGGTGAAGAACAGAGAACCAGTTTTGTCCGAGAAACTTAACCACCCCGTCGGAGGAGAAAGCTTCAAGAAAAGAAAGACGAACACAAAGATTGATAACGAGGAAGACACGAAAGAAAAGAGGATCAAAGTATGTGCAGAAGAGAGAGATTCAAAGGTTACAGGCCAAATTCCGACGAAAATCAATTCCACTGCCACGACCGCCTTTGGAGAAACCTCTGCAGTTACTTCAAAAGAGAACTCAAAAGCTTCCGAAGTTCAAAAACCAGATTACATTCACGTTCGAGCTCGTCGTGGCCAAGCCACTGACAGCCATAGCCTCGCTGAAAGAGCAAGAAGGGAAAAAATCAGTGAGAGAATGAAGTATTTGCAAGATCTAGTACCAGGATGTAATAAAATTACAGGAAAAGCTGGAATGCTGGACGAAATTATAAATTATGTTCAATCTCTACAAAGACAAGTTGAGTTCTTGTCAATGAAATTAGCTGCTGTAAACCCATGTCTTGACTTCAATCTCAACGTCGATGAAATCTTTCCCAAAGAGGCACATCCTACTTGTACTTCAAAATTTCCACCATTAGGTGTACAATCAGAGCTTGATAGCCCTGTCTACCTCAACTTTGATCAGTCACAGCAAATGGGTTCATTCTGTGGGCAGGAAATGATTTCAGACGGGCTTCGCCGGACAATCAGTGCTCCGGTCTCAATCCCGGAAAATTCTCTCGTACCCACCTGCTTTCCGGTCAGTTCTTCCTCTCCTTCATTCCTTCCTCTGCTTGAACTCAAAATTTTCTCACTAACCAATCACTCTCTCGACTCCAAATCCAGCCCTCTTCAGCTTGGGATGTAG 1206 45.94 MNRASTEMLHCLSTTGIFADTTVLERQTSRQKRYHDQLPLHHLHEYSTYSLPASIQAAQAPNSLTSGGETELSEVKRDMGLENVWSGLGKFEIPTVGFRSGLELNPTISRTSSSPPVIMEVKNREPVLSEKLNHPVGGESFKKRKTNTKIDNEEDTKEKRIKVCAEERDSKVTGQIPTKINSTATTAFGETSAVTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPCLDFNLNVDEIFPKEAHPTCTSKFPPLGVQSELDSPVYLNFDQSQQMGSFCGQEMISDGLRRTISAPVSIPENSLVPTCFPVSSSSPSFLPLLELKIFSLTNHSLDSKSSPLQLGM 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45414433 45415992 - Bma028177.1 Bma08g00792 87619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00792 401 SMART finulus 225 275 IPR011598 GO:0046983
Bma08g00792 401 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 36 372 IPR024097 GO:0006355
Bma08g00792 401 Pfam Helix-loop-helix DNA-binding domain 223 270 IPR011598 GO:0046983
Bma08g00792 401 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 219 269 IPR011598 GO:0046983
Bma08g00792 401 CDD bHLH_AtBPE_like 209 292 - -
Bma08g00792 401 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 217 287 IPR036638 GO:0046983
Bma08g00792 401 Gene3D - 216 287 IPR036638 GO:0046983
Bma08g00792 401 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 36 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00792 Bma-Chr8:45414433 Bma12g00509 Bma-Chr12:16505688 1.27E-84 dispersed
Bma03g00554 Bma-Chr3:4562973 Bma08g00792 Bma-Chr8:45414433 0 wgd
Bma08g00318 Bma-Chr8:4767107 Bma08g00792 Bma-Chr8:45414433 6.63E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57766 PF00010 HLH 1.10E-06 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00792 - - jre:109013802 374.4