Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00805 ATGGCTCAGATTCAACCTCCGCCTCAAAATGTGATGCCCGGCGTCAATCAAGCTGCGATCGGTGGTCAGAACCAGTTTGTGACAACCTCGATGTATGTCGGGGATCTTGACCCGAACGTGACGGATTCGCAACTATATGACCTGTTCAATCAGGTCGGTCAGGTGGTGTCTGTTCGAGTCTGCAGGGATTTGTCTACTCGACGATCGCTGGGCTACGGTTACGTCAACTATAGCAACCCGCAAGATGGTGCAAGAGCAATGGATGTTCTGAACTTTACACCTATAAATGGGAAGCCCATCCGAGTAATGTATTCTCATCGTGACCCCAGCATCCGAAAAAGTGGTGCTGGAAATATCTTTATCAAGAATTTGGACAAGGCGATTGATCACAAAGCATTACAGGAGACATTTTCTGCATTTGGGAATGTAGTCTCCTGTAAGGTGGCCACAGACCAATCTGGTCAGTCAAAAGGCTATGGATTTGTGCAATTTGATAATGAGGAATCTGCTCAAAAGGCTATTGAAAAGTTGAACGGAATGTTATTGAATGACAAACAAGTCTTCGTTGGACCTTTCCTCCGTAAACAGGAAAGAGATGGTTCTGTTGACAAATCTAAATTCAACAATGTATATCTGAAAAATCTCTCTGATGGTACCACTGAAGAAGACCTGCAAAAGATATTTGGTGAATTCGGGCCCATCACTAGTGTTGCAGTGATGAGAGATGAGGATGGTAAATCAAAGTGCTTTGGGTTTGTGAACTTTGAGAATCCAGATGATGCAGCTATGTCTGTTGAGGCACTTAATGGAAAGAAGTTCGATGGTAAGGAGTGGTATGTTGGGAAAGCCCAGAAGAAATCTGAGAGAGAAGTTGAATTAAAAAGTCAATTTGAACGTAATATGAAAGAGGCAGCTGACAAGCATCAGGGAGCAAACTTATATGTTAAAAATTTAGACGACAGTATCAACGATGATATGCTTAAGGAGTTGTTCTCTCCATTTGGCACAATTACTTCTTGCAAGGTTATGCAAGACCCTAATGGAATAAGTAGGGGATCTGGGTTTGTAGCATTCTCCTCTTCTGAAGAGGCTTCTAGAGCTCTCTTGGAGATGAATGGAAAAATGATTGTGTCGAAACCTCTGTATGTTGCACCTGCACAGAGGAAAGAAGAAAGAAGGCTTAGGTTGCAGGCACAATTTTCTCAGATGCAACCAGTAGCAATGCCACACTCTGTTGCTCCTCGAATGACAATGTATCCACCTAGTGGTCCTGGTCTTGCCCAACAAATATTCTATAATCAGGCTCCGCCAGCTATAATTCCTTCACAGGCTGGCTACGGTTATCAGCAACAAATTGTTCCTGGCATTAGGCCTGGTGGGGCTTCGATGCCAAACTTTTTTGTGCCAATGGTTCAACAGGGCCCGCAAGGACAACGCCCTGGTGGAAGACGTTCTGGGGGCCTTCAGCAAACCCAGCAGCCTGTTCCACTAATGCACCAGCAGATGGTACCAAGGGGGCGTGTGTACCGTTATCCTCCTGGACGGGGCCTGCCTGATGTTCCTATGCCTGGCATTGCTGGAGGCATGTTTTCTGTTCCATATGACATGAGTGGCATGCCACTGCGTGATGCAGCTATCTCTCAGCCTATTCCAATTGGTGCTTTGGCTTCAGCTCTAGCAAATGCTTCTCCAGATCAGCAGAGAACAATGCTAGGGGAGAGTCTTTACCCACTTGTGGAGCAGCTTGAGCCTGAGAATGCCGCCAAAGTGACTGGCATGCTTCTCGAAATGGATCAGACGGAGGTTCTACATTTGCTGGAGTCACCCGAGGCTCTGAAAGCAAAAGTGGCCGAGGCTATGGAGGTTCTAAGAAATGTTGCTCAGCAGCAGGCTGGAAATGCAGCTGATCAGTTGGTCAATTTTGCAAATTTAATATCCTATACGACACCGTTCGTAAGTACAAATTTTAGGCCCAAAACCCTAATGCTTCACATAAATCCTCTCTTCAGGTACGTCGATCTTGAGAGCATTACCCTAACAATGGCGGCAGCAACCGAGTCGGTTCAGTGCTTTGGTCGGAAGAAGACCGCTGTAGCGGTGACCCACTGCAAGCGAGGTCGGGGACTCATCAAGCTTAATGGATCCCCAATCGAACTCGTTGAGCCTGAGATTCTTCGCATCAAGGCTATGGAGCCCATCCTCCTTCTCGGAAGACACCGTTTTGCGGAGGTTGATATGCGCATTCGGGTGAAAGGAGGTGGCCACACCTCGCAGATCTACGCTATTCGTCAGAGCATCGCCAAGGCCCTCGTAGCTTTCAACCAGAAGTATGTGGACGAGCAAACCAAGAAGGAGATCAAGGACATCCTCGTCAGGTACGATAGGACATTGCTAGTCGCCGATCCTAGACGCTGTGAGCCGAAGAAGTTTGGTGGGCGTGGTGCTCGCGCTAGGTTCCAGAAATCTTATCGTTGA 2475 47.19 MAQIQPPPQNVMPGVNQAAIGGQNQFVTTSMYVGDLDPNVTDSQLYDLFNQVGQVVSVRVCRDLSTRRSLGYGYVNYSNPQDGARAMDVLNFTPINGKPIRVMYSHRDPSIRKSGAGNIFIKNLDKAIDHKALQETFSAFGNVVSCKVATDQSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVFVGPFLRKQERDGSVDKSKFNNVYLKNLSDGTTEEDLQKIFGEFGPITSVAVMRDEDGKSKCFGFVNFENPDDAAMSVEALNGKKFDGKEWYVGKAQKKSEREVELKSQFERNMKEAADKHQGANLYVKNLDDSINDDMLKELFSPFGTITSCKVMQDPNGISRGSGFVAFSSSEEASRALLEMNGKMIVSKPLYVAPAQRKEERRLRLQAQFSQMQPVAMPHSVAPRMTMYPPSGPGLAQQIFYNQAPPAIIPSQAGYGYQQQIVPGIRPGGASMPNFFVPMVQQGPQGQRPGGRRSGGLQQTQQPVPLMHQQMVPRGRVYRYPPGRGLPDVPMPGIAGGMFSVPYDMSGMPLRDAAISQPIPIGALASALANASPDQQRTMLGESLYPLVEQLEPENAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVLRNVAQQQAGNAADQLVNFANLISYTTPFVSTNFRPKTLMLHINPLFRYVDLESITLTMAAATESVQCFGRKKTAVAVTHCKRGRGLIKLNGSPIELVEPEILRIKAMEPILLLGRHRFAEVDMRIRVKGGGHTSQIYAIRQSIAKALVAFNQKYVDEQTKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45649075 45656663 - Bma028194.1 Bma08g00805 87632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00805 824 SMART poly_2 563 626 IPR002004 GO:0003723
Bma08g00805 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 189 IPR000504 GO:0003723
Bma08g00805 824 SUPERFAMILY RNA-binding domain, RBD 208 390 IPR035979 GO:0003676
Bma08g00805 824 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 551 628 IPR002004 GO:0003723
Bma08g00805 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Bma08g00805 824 Gene3D - 679 824 IPR014721 -
Bma08g00805 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 186 IPR000504 GO:0003723
Bma08g00805 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 313 381 IPR000504 GO:0003723
Bma08g00805 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 32 101 IPR000504 GO:0003723
Bma08g00805 824 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 278 IPR000504 GO:0003723
Bma08g00805 824 SUPERFAMILY PABC (PABP) domain 492 637 IPR036053 GO:0003723
Bma08g00805 824 CDD RRM4_I_PABPs 310 388 - -
Bma08g00805 824 SUPERFAMILY RNA-binding domain, RBD 29 198 IPR035979 GO:0003676
Bma08g00805 824 Pfam Ribosomal protein S9/S16 692 824 IPR000754 GO:0003735|GO:0005840|GO:0006412
Bma08g00805 824 CDD RRM2_I_PABPs 115 191 IPR045305 -
Bma08g00805 824 SMART rrm1_1 312 384 IPR000504 GO:0003723
Bma08g00805 824 SMART rrm1_1 118 190 IPR000504 GO:0003723
Bma08g00805 824 SMART rrm1_1 209 281 IPR000504 GO:0003723
Bma08g00805 824 SMART rrm1_1 30 103 IPR000504 GO:0003723
Bma08g00805 824 Gene3D - 22 118 IPR012677 -
Bma08g00805 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 29 107 IPR000504 GO:0003723
Bma08g00805 824 ProSitePatterns Ribosomal protein S9 signature. 752 770 IPR020574 GO:0003735|GO:0005840|GO:0006412
Bma08g00805 824 PANTHER RNA BINDING PROTEIN 18 633 - -
Bma08g00805 824 CDD RRM1_I_PABPs 30 109 - -
Bma08g00805 824 SMART rrm2_1 312 384 IPR003954 GO:0003676
Bma08g00805 824 SMART rrm2_1 30 103 IPR003954 GO:0003676
Bma08g00805 824 SMART rrm2_1 209 281 IPR003954 GO:0003676
Bma08g00805 824 SMART rrm2_1 118 190 IPR003954 GO:0003676
Bma08g00805 824 Gene3D - 547 630 - -
Bma08g00805 824 PANTHER POLYADENYLATE-BINDING PROTEIN 18 633 - -
Bma08g00805 824 CDD RRM3_I_PABPs 207 286 - -
Bma08g00805 824 Gene3D - 119 190 IPR012677 -
Bma08g00805 824 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 30 624 IPR006515 GO:0003723
Bma08g00805 824 SUPERFAMILY Ribosomal protein S5 domain 2-like 687 824 IPR020568 -
Bma08g00805 824 Pfam Poly-adenylate binding protein, unique domain 559 623 IPR002004 GO:0003723
Bma08g00805 824 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 311 388 IPR000504 GO:0003723
Bma08g00805 824 Gene3D - 193 293 IPR012677 -
Bma08g00805 824 Gene3D - 294 395 IPR012677 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00805 Bma12g00434 CCT
Bma03g00514 Bma08g00805 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g00658 Bma-Chr1:5992093 Bma08g00805 Bma-Chr8:45649075 0 dispersed
Bma01g02525 Bma-Chr1:82873009 Bma08g00805 Bma-Chr8:45649075 0 dispersed
Bma04g01610 Bma-Chr4:52037302 Bma08g00805 Bma-Chr8:45649075 1.08E-21 dispersed
Bma05g00509 Bma-Chr5:23550578 Bma08g00805 Bma-Chr8:45649075 2.08E-87 dispersed
Bma08g00805 Bma-Chr8:45649075 Bma12g00434 Bma-Chr12:10893670 1.41E-87 dispersed
Bma05g01304 Bma-Chr5:52331285 Bma08g00805 Bma-Chr8:45649075 2.62E-08 transposed
Bma10g01133 Bma-Chr10:37409216 Bma08g00805 Bma-Chr8:45649075 1.01E-18 transposed
Bma03g00514 Bma-Chr3:3990286 Bma08g00805 Bma-Chr8:45649075 6.41E-91 transposed
Bma05g01222 Bma-Chr5:51629348 Bma08g00805 Bma-Chr8:45649075 1.66E-07 transposed
Bma03g00511 Bma-Chr3:3976725 Bma08g00805 Bma-Chr8:45649075 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00805 K13126 - jre:108988866 1051.2