Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00813 ATGTCTGTCCTAATAGTTACCAGTCTTGGCGATATAGTGATAGATTTGCACACCGAGAAGTGTCCCATGACCTGCAAGAACTTCTTAAAACTGTGCAAAATCAAGTATTATAATGGGTGCCTATTTCACACGGTTCAGAAGGATTTTACAGCTCAGACTGGGGACCCAACTGGTACGGGTTCTGGTGGCGACTCAATATATAGATTTCTATATGGTGATCAGGCTCGCTTTTTCAGTGATGAGATTCATCTTGATTTAAAGCATTCTAAAAATGGTACTGTAGCAATGGCTAGTGCTGGGGAAAACGTGAATGCTTCTCAGTTCTATATTACTCTGCGGGATGATCTGGATTATCTTGATGGTAAACACACTGTTTTTGGAGAGGTAGCAGAAGGGCTTGAAACTTTGACGAGGATAAATGAAGCTTATGTGGATGAGAACAGCAGGCCATACAAAAATATCCGTATCAAACACACCAACATACTGTATGATCCATTTGATGATCCTCCTCAGCTGTCTGAGTTGATTCCGCCAGTTTCTCCTGAAGGAAAACCAAAGGATGAAGTTGATGATGAGGTGCGCCTCGAAGATGATTGGATTGGGGACATTCCTGATGCTGAAGTAAAGCCTCCAGAAAATGTGTTATTTGTTTGTAAGCTGAATCCAGTGACAGAAGATGAAGATTTGCATACAATCTTCTCACGGTTTGGCGCTGTAGTATCGGCTGATATTATTCGTGATTACAAAACTGGAGACAGTTTATGCTATGCCTTCATTGAATTTGAGACGAATGAAGCTTGTGAAGAAGCTTATTTCAAGATGGATAATGCTCTAATCGATGATAGAAGGATACATGTGGATTTCAGTCAAAGCGTCGCGAAACTGTGGTCCCAGCACAAGCTCAAAAATCATCAATTTGGTAAAGAAAGTGGTTGCTTCAAATGTGGTGCTCCTGACCATATGGCAAAGGATTGCTCTGGTGAACCTGGAGCAAAGCAGCAGGTTCCTAAGTATGAAATGGTTTTTGATGAAGACTCTCCAAAGAGCCCAAGGCGAGAAAAGACTAGTCGAACCCGCGATCAAGACAACTCAACTCAGAAGTATACAGAAAGTGAAAAGAGAAAGGCAAGTGATGGGTACAGACCAAGTACCGAAAAGAGTGAACATAAGGAGGATGGGATTTCTGAAGCAGGTAAAGCAATTCAATCAAGCGGCAGCAGGAGAGACAGGGATGAACATGTAGAGCTAAGAAATACAGATAAGCATGGGAAGAGACCAAGAGCACGAGACGATGATAGGAGAAATGGCCAAACTTATAGATACAGGGGAGACGATTACAGACGAGAGGAAAAGAAGGATGCTAGAGGTGATAAAAGTAGAAGCGATTATGTTGATAGACACCTCGATAGGAGGGACAACAAATCGAGCGACAGCCGTGAAGAAAAAAGAAGATATGATCTTAGTGAAAAGAGAAATAAAGATGATGACAGGAAGAGAAATTCAGATGTTAACAAGAATGGAAAGGGCAACGAGCCCAGTCATAGGAAAAGAAGTGCAGATGATGATGGGTACAGGCAGGAGGGAAGAGCAAGACAAAGGCAATCCAAGGAAGAAGCTGACTACAATGGCGACGAAGAGAGAAGGCAAAAGGGTGAGAGAGGAAGATGA 1668 42.45 MSVLIVTSLGDIVIDLHTEKCPMTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGSGGDSIYRFLYGDQARFFSDEIHLDLKHSKNGTVAMASAGENVNASQFYITLRDDLDYLDGKHTVFGEVAEGLETLTRINEAYVDENSRPYKNIRIKHTNILYDPFDDPPQLSELIPPVSPEGKPKDEVDDEVRLEDDWIGDIPDAEVKPPENVLFVCKLNPVTEDEDLHTIFSRFGAVVSADIIRDYKTGDSLCYAFIEFETNEACEEAYFKMDNALIDDRRIHVDFSQSVAKLWSQHKLKNHQFGKESGCFKCGAPDHMAKDCSGEPGAKQQVPKYEMVFDEDSPKSPRREKTSRTRDQDNSTQKYTESEKRKASDGYRPSTEKSEHKEDGISEAGKAIQSSGSRRDRDEHVELRNTDKHGKRPRARDDDRRNGQTYRYRGDDYRREEKKDARGDKSRSDYVDRHLDRRDNKSSDSREEKRRYDLSEKRNKDDDRKRNSDVNKNGKGNEPSHRKRSADDDGYRQEGRARQRQSKEEADYNGDEERRQKGERGR 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45746917 45751604 + Bma028203.1 Bma08g00813 87640

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00813 555 MobiDBLite consensus disorder prediction 403 555 - -
Bma08g00813 555 Gene3D - 307 380 - -
Bma08g00813 555 SUPERFAMILY RNA-binding domain, RBD 201 294 IPR035979 GO:0003676
Bma08g00813 555 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 160 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 199 IPR035542 -
Bma08g00813 555 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 200 461 IPR035542 -
Bma08g00813 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 285 IPR000504 GO:0003723
Bma08g00813 555 CDD cyclophilin_RRM 4 169 IPR035538 -
Bma08g00813 555 MobiDBLite consensus disorder prediction 338 396 - -
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 ProSiteProfiles Zinc finger CCHC-type profile. 312 325 IPR001878 GO:0003676|GO:0008270
Bma08g00813 555 CDD RRM_PPIL4 210 292 - -
Bma08g00813 555 MobiDBLite consensus disorder prediction 324 555 - -
Bma08g00813 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Bma08g00813 555 Pfam Zinc knuckle 311 326 IPR001878 GO:0003676|GO:0008270
Bma08g00813 555 SMART c2hcfinal6 311 327 IPR001878 GO:0003676|GO:0008270
Bma08g00813 555 Gene3D - 1 172 IPR029000 -
Bma08g00813 555 SUPERFAMILY Cyclophilin-like 1 173 IPR029000 -
Bma08g00813 555 SMART rrm1_1 214 287 IPR000504 GO:0003723
Bma08g00813 555 Gene3D - 179 295 IPR012677 -
Bma08g00813 555 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00813 K12735 PPIL4; peptidyl-prolyl cis-trans isomerase-like 4 [EC:5.2.1.8] - jre:109003438 677.937
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00813 Bma-Chr8:45746917 Bma15g01111 Bma-Chr15:44081255 5.41E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1086 . . . . . . Bma08g00813 . . . . . . . . Cpe04g00858 . Bhi05g02021 . . . . . . . . . . . . . . . . . . Csa07g01188 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy01g00875 Cme01g01530
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009344 0 6 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00813 Bma_Chr08 FPKM 8.023399 8.717001 7.158551 7.34347 9.506447 11.006332 9.530762 9.451627 8.494411 7.961442