Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00813 ATGTCTGTCCTAATAGTTACCAGTCTTGGCGATATAGTGATAGATTTGCACACCGAGAAGTGTCCCATGACCTGCAAGAACTTCTTAAAACTGTGCAAAATCAAGTATTATAATGGGTGCCTATTTCACACGGTTCAGAAGGATTTTACAGCTCAGACTGGGGACCCAACTGGTACGGGTTCTGGTGGCGACTCAATATATAGATTTCTATATGGTGATCAGGCTCGCTTTTTCAGTGATGAGATTCATCTTGATTTAAAGCATTCTAAAAATGGTACTGTAGCAATGGCTAGTGCTGGGGAAAACGTGAATGCTTCTCAGTTCTATATTACTCTGCGGGATGATCTGGATTATCTTGATGGTAAACACACTGTTTTTGGAGAGGTAGCAGAAGGGCTTGAAACTTTGACGAGGATAAATGAAGCTTATGTGGATGAGAACAGCAGGCCATACAAAAATATCCGTATCAAACACACCAACATACTGTATGATCCATTTGATGATCCTCCTCAGCTGTCTGAGTTGATTCCGCCAGTTTCTCCTGAAGGAAAACCAAAGGATGAAGTTGATGATGAGGTGCGCCTCGAAGATGATTGGATTGGGGACATTCCTGATGCTGAAGTAAAGCCTCCAGAAAATGTGTTATTTGTTTGTAAGCTGAATCCAGTGACAGAAGATGAAGATTTGCATACAATCTTCTCACGGTTTGGCGCTGTAGTATCGGCTGATATTATTCGTGATTACAAAACTGGAGACAGTTTATGCTATGCCTTCATTGAATTTGAGACGAATGAAGCTTGTGAAGAAGCTTATTTCAAGATGGATAATGCTCTAATCGATGATAGAAGGATACATGTGGATTTCAGTCAAAGCGTCGCGAAACTGTGGTCCCAGCACAAGCTCAAAAATCATCAATTTGGTAAAGAAAGTGGTTGCTTCAAATGTGGTGCTCCTGACCATATGGCAAAGGATTGCTCTGGTGAACCTGGAGCAAAGCAGCAGGTTCCTAAGTATGAAATGGTTTTTGATGAAGACTCTCCAAAGAGCCCAAGGCGAGAAAAGACTAGTCGAACCCGCGATCAAGACAACTCAACTCAGAAGTATACAGAAAGTGAAAAGAGAAAGGCAAGTGATGGGTACAGACCAAGTACCGAAAAGAGTGAACATAAGGAGGATGGGATTTCTGAAGCAGGTAAAGCAATTCAATCAAGCGGCAGCAGGAGAGACAGGGATGAACATGTAGAGCTAAGAAATACAGATAAGCATGGGAAGAGACCAAGAGCACGAGACGATGATAGGAGAAATGGCCAAACTTATAGATACAGGGGAGACGATTACAGACGAGAGGAAAAGAAGGATGCTAGAGGTGATAAAAGTAGAAGCGATTATGTTGATAGACACCTCGATAGGAGGGACAACAAATCGAGCGACAGCCGTGAAGAAAAAAGAAGATATGATCTTAGTGAAAAGAGAAATAAAGATGATGACAGGAAGAGAAATTCAGATGTTAACAAGAATGGAAAGGGCAACGAGCCCAGTCATAGGAAAAGAAGTGCAGATGATGATGGGTACAGGCAGGAGGGAAGAGCAAGACAAAGGCAATCCAAGGAAGAAGCTGACTACAATGGCGACGAAGAGAGAAGGCAAAAGGGTGAGAGAGGAAGATGA 1668 42.45 MSVLIVTSLGDIVIDLHTEKCPMTCKNFLKLCKIKYYNGCLFHTVQKDFTAQTGDPTGTGSGGDSIYRFLYGDQARFFSDEIHLDLKHSKNGTVAMASAGENVNASQFYITLRDDLDYLDGKHTVFGEVAEGLETLTRINEAYVDENSRPYKNIRIKHTNILYDPFDDPPQLSELIPPVSPEGKPKDEVDDEVRLEDDWIGDIPDAEVKPPENVLFVCKLNPVTEDEDLHTIFSRFGAVVSADIIRDYKTGDSLCYAFIEFETNEACEEAYFKMDNALIDDRRIHVDFSQSVAKLWSQHKLKNHQFGKESGCFKCGAPDHMAKDCSGEPGAKQQVPKYEMVFDEDSPKSPRREKTSRTRDQDNSTQKYTESEKRKASDGYRPSTEKSEHKEDGISEAGKAIQSSGSRRDRDEHVELRNTDKHGKRPRARDDDRRNGQTYRYRGDDYRREEKKDARGDKSRSDYVDRHLDRRDNKSSDSREEKRRYDLSEKRNKDDDRKRNSDVNKNGKGNEPSHRKRSADDDGYRQEGRARQRQSKEEADYNGDEERRQKGERGR 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45746917 45751604 + Bma028203.1 Bma08g00813 87640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00813 555 MobiDBLite consensus disorder prediction 403 555 - -
Bma08g00813 555 Gene3D - 307 380 - -
Bma08g00813 555 SUPERFAMILY RNA-binding domain, RBD 201 294 IPR035979 GO:0003676
Bma08g00813 555 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 160 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 199 IPR035542 -
Bma08g00813 555 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 200 461 IPR035542 -
Bma08g00813 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 285 IPR000504 GO:0003723
Bma08g00813 555 CDD cyclophilin_RRM 4 169 IPR035538 -
Bma08g00813 555 MobiDBLite consensus disorder prediction 338 396 - -
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Bma08g00813 555 ProSiteProfiles Zinc finger CCHC-type profile. 312 325 IPR001878 GO:0003676|GO:0008270
Bma08g00813 555 CDD RRM_PPIL4 210 292 - -
Bma08g00813 555 MobiDBLite consensus disorder prediction 324 555 - -
Bma08g00813 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 291 IPR000504 GO:0003723
Bma08g00813 555 Pfam Zinc knuckle 311 326 IPR001878 GO:0003676|GO:0008270
Bma08g00813 555 SMART c2hcfinal6 311 327 IPR001878 GO:0003676|GO:0008270
Bma08g00813 555 Gene3D - 1 172 IPR029000 -
Bma08g00813 555 SUPERFAMILY Cyclophilin-like 1 173 IPR029000 -
Bma08g00813 555 SMART rrm1_1 214 287 IPR000504 GO:0003723
Bma08g00813 555 Gene3D - 179 295 IPR012677 -
Bma08g00813 555 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00813 Bma-Chr8:45746917 Bma15g01111 Bma-Chr15:44081255 5.41E-33 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00813 K12735 - jre:109003438 677.937