Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00818 ATGGGAGTAATTGCAGGTGCGGGTCATTATGCAGCTAATCCTCACTCAAATGCTGCCATGGTGGCTTCTGCAACTCCTCCAAATCAATCTCCAGCCTCTTTTTCAAATTCACCTCACCAGCTTGCATACCAGCAAGCCCAACATTTCTATCACCAACAGCAGCAGCAACAACAACAGCAGCTGCAAATGTTCTGGGCTAACCAAATGCAAGAAATTGAGCAGAATACAGACTTCAAAAATCACAGCCTTCCTCTTGCTAGGATAAAGAAAATAATGAAAGCCGATGAGGATGTCAGAATGATATCGGCAGAAGCCCCAGTGATATTTGCAAAAGCGTGTGAAATGTTCATCCTCGAGCTGACCTTGCGCTCTTGGATCCATACAGAAGAGAACAAGAGAAGAACTCTGCAGAAAAACGATATTGCAGCTGCCATTTCAAGGACAGACGTCTTCGATTTTTTGGTTGACATCATTCCCAGGGATGAGTTGAAAGAGGAGGGATTGGGAGTGACCAAGGCCTCTCTTCCGGTCGTTGGCTCGCCGGCTGATATTCCTTATTACTATGTCCCGCCACATCCAGTTGGGCCCACAATGTATGCGGCTCAACAGCCTCGGCCACCTATTGCTTTTATGCCATGGCCCCACAGCCAGCCGCAGCCGGACCAGAACAATGCGTAG 678 48.08 MGVIAGAGHYAANPHSNAAMVASATPPNQSPASFSNSPHQLAYQQAQHFYHQQQQQQQQQLQMFWANQMQEIEQNTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAISRTDVFDFLVDIIPRDELKEEGLGVTKASLPVVGSPADIPYYYVPPHPVGPTMYAAQQPRPPIAFMPWPHSQPQPDQNNA 225
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45893581 45894258 + Bma028212.1 Bma08g00818 87645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00818 225 Pfam Core histone H2A/H2B/H3/H4 33 145 IPR007125 GO:0003677
Bma08g00818 225 SUPERFAMILY Histone-fold 41 154 IPR009072 GO:0046982
Bma08g00818 225 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 18 193 - -
Bma08g00818 225 Gene3D Histone, subunit A 43 160 IPR009072 GO:0046982
Bma08g00818 225 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 18 193 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00818 K08066 NFYC, HAP5; nuclear transcription factor Y, gamma - tcc:18594891 322.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01251 Bma-Chr3:20829954 Bma08g00818 Bma-Chr8:45893581 2.16E-62 dispersed
Bma06g00262 Bma-Chr6:3628284 Bma08g00818 Bma-Chr8:45893581 1.29E-61 dispersed
Bma05g00812 Bma-Chr5:45432641 Bma08g00818 Bma-Chr8:45893581 1.13E-30 transposed
Bma11g00317 Bma-Chr11:2976158 Bma08g00818 Bma-Chr8:45893581 1.76E-11 transposed
Bma14g01344 Bma-Chr14:24851229 Bma08g00818 Bma-Chr8:45893581 2.12E-67 transposed
Bma03g00499 Bma-Chr3:3919350 Bma08g00818 Bma-Chr8:45893581 9.13E-51 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT3G48590 76.4 6.2e-73 270.8
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.7 2.1e-65 245.7
Bma08g00818 . 61 196 CCAAT-HAP5 Transcription Factor Family AT3G48590 71.5 1.5e-50 196.4
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.0 3.7e-49 191.8
Bma14g01344 . 23 168 CCAAT-HAP5 Transcription Factor Family AT1G08970 74.2 1.1e-50 196.8
Bma08g00818 . 5 159 CCAAT-HAP5 Transcription Factor Family AT1G08970 67.1 1.2e-47 186.8
Bma03g01251 CCT,ECH 53 151 CCAAT-HAP5 Transcription Factor Family AT1G08970 79.8 2.1e-41 166.0
Bma06g00262 . 39 137 CCAAT-HAP5 Transcription Factor Family AT1G08970 78.8 4.7e-41 164.9
Bma14g01344 . 72 223 CCAAT-HAP5 Transcription Factor Family AT1G54830 71.1 5.6e-52 201.1
Bma08g00818 . 61 191 CCAAT-HAP5 Transcription Factor Family AT1G54830 74.0 6.9e-50 194.1
Bma03g01251 CCT,ECH 53 190 CCAAT-HAP5 Transcription Factor Family AT1G54830 69.3 2.2e-48 189.1
Bma06g00262 . 39 176 CCAAT-HAP5 Transcription Factor Family AT1G54830 67.9 8.4e-48 187.2
Bma03g01251 CCT,ECH 53 237 CCAAT-HAP5 Transcription Factor Family AT5G63470 69.6 5.1e-65 244.6
Bma06g00262 . 39 223 CCAAT-HAP5 Transcription Factor Family AT5G63470 64.9 2.7e-58 222.2
Bma08g00818 . 61 190 CCAAT-HAP5 Transcription Factor Family AT5G63470 70.5 2.8e-47 185.7
Bma14g01344 . 73 226 CCAAT-HAP5 Transcription Factor Family AT5G63470 61.3 5.0e-44 174.9
Bma08g00818 . 21 189 CCAAT-HAP5 Transcription Factor Family AT1G56170 79.4 1.7e-63 239.2
Bma03g01251 CCT,ECH 53 176 CCAAT-HAP5 Transcription Factor Family AT1G56170 71.7 1.2e-48 189.9
Bma14g01344 . 45 190 CCAAT-HAP5 Transcription Factor Family AT1G56170 70.3 4.5e-48 188.0
Bma06g00262 . 39 162 CCAAT-HAP5 Transcription Factor Family AT1G56170 72.4 7.7e-48 187.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000741 2 9 3 3 3 2 3 2 2 2 2 2 4 2 2 4 2 5 3 2 2 2 2 2 2 2 1 17 4 2 95
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57768 PF00125 Histone 2.50E-18 CL0012 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00818 Bma_Chr08 FPKM 0.438776 1.020895 2.412137 2.682696 2.534591 1.525718 3.020582 3.826852 3.08578 3.07901