Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00819 GATGGATCTGAAGGACACCGAACCGTTATCCGTCCACTGTCTAGAGCGGGAGGTGATCGCTGCTCTGTGAAACCAGCCTCACGCATTGCCCTCCGCTCTACGAACCACGCAGCCTTCAGCGTTAGCCGAGGCTCCGGGGGTCAACTCCAGACTTGGAGCGGGCGGCACAGATTCTGTCCGTGTCAGATCCGATACAGCGGACGCCCAAAAGGCGTGACTCCCAAATATAGTTTGAAGCCTTTGGTGGCAAGATTGTCCGAACTCCTTGGTCTTGAGGTGAAAATGGCTAATGATTGTATTGGTGAGGAAGTTGAGAAATTGGTTGCTGAATTACCTGATGGAGGTGTATTGCTTCTCGAGAATGTGCGATTCTACAAGGAGGAAGAGAAGAATGACCCCGAGTTTTCAAAGAAGTTAGCTTCTCTTGGAGATGTATATGTGAATGATGCCTTCGGCACTGCTCATAGAGCTCATGCTTCAACCGAGGGAGTGGCTAAATACCTAAAACCTTCTGTTGCAGGATTTCTTATGCAGAAGGAACTTGACTATCTTGTTGGAGCGGTATCGAATCCCAAGAGGCCTTTTGCTGCCATAGTTGGTGGGTCAAAGGTATCTTCAAAGATTGGTGTGATCGAGTCCTTATTGGAGAAGGTCGATGTTCTATTGTTGGGTGGAGGAATGATATTTACATTTTACAAAGCGCAAGGGTACTCTGTTGGGTCATCCCTTGTTGAGGAAGATAAGCTCGATCTTGCTACCTCCCTTATGGAGAAGGCCAAAAAGAAGGGGGTCTCTTTGCTACTTCCAACTGACGTGATTATCGCCGATAAATTTGCTCCTGATGCTAATAGCATGACTGTACCAGCATCAGGCATCCCAGATGGTTGGATGGGGTTGGATATTGGACCCGATTCCATAAAGACGTTCAGCGAAGCTTTGGATTCAACAAAAACAATAATTTGGAATGGACCAATGGGCGTGTTTGAGTTTGATAAGTTTGCTGCTGGAACAGAGGCAATTGCCAGAAAATTGGCAGAGCTGAGTGGGAAGAACGTGACTACCATTATCGGAGGAGGAGACTCTGTTGCAGCTGTGGAGAAGGTCGGGCTTGCTGACAAGATGAGCCACATCTCCACGGGAGGTGGTGCCAGCTTAGAGCTTCTCGAAGGGAAACCACTTCCGGGTGTCCTTGCGCTCGACGACGCTTGA 1209 48.72 DGSEGHRTVIRPLSRAGGDRCSVKPASRIALRSTNHAAFSVSRGSGGQLQTWSGRHRFCPCQIRYSGRPKGVTPKYSLKPLVARLSELLGLEVKMANDCIGEEVEKLVAELPDGGVLLLENVRFYKEEEKNDPEFSKKLASLGDVYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVDVLLLGGGMIFTFYKAQGYSVGSSLVEEDKLDLATSLMEKAKKKGVSLLLPTDVIIADKFAPDANSMTVPASGIPDGWMGLDIGPDSIKTFSEALDSTKTIIWNGPMGVFEFDKFAAGTEAIARKLAELSGKNVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 402
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45895131 45905417 + Bma028213.1 Bma08g00819 87646

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00819 402 Gene3D - 188 401 IPR015824 GO:0004618|GO:0006096
Bma08g00819 402 AntiFam Antisense to SRP RNA 5 58 - -
Bma08g00819 402 PANTHER PHOSPHOGLYCERATE KINASE, CYTOSOLIC 66 402 - -
Bma08g00819 402 SUPERFAMILY Phosphoglycerate kinase 66 401 IPR036043 GO:0004618|GO:0006096
Bma08g00819 402 Gene3D - 63 185 IPR015824 GO:0004618|GO:0006096
Bma08g00819 402 CDD Phosphoglycerate_kinase 67 401 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PIRSF Pgk 62 402 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 Hamap Phosphoglycerate kinase [pgk]. 12 401 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PRINTS Phosphoglycerate kinase family signature 377 394 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PRINTS Phosphoglycerate kinase family signature 114 129 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PRINTS Phosphoglycerate kinase family signature 142 164 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PRINTS Phosphoglycerate kinase family signature 354 365 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PRINTS Phosphoglycerate kinase family signature 173 195 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PRINTS Phosphoglycerate kinase family signature 196 215 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PRINTS Phosphoglycerate kinase family signature 318 343 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 Pfam Phosphoglycerate kinase 67 391 IPR001576 GO:0004618|GO:0006096
Bma08g00819 402 PANTHER PHOSPHOGLYCERATE KINASE 66 402 IPR001576 GO:0004618|GO:0006096
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00819 K00927 PGK, pgk; phosphoglycerate kinase [EC:2.7.2.3] - twl:119989508 610.912
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g00819 Bma12g00579 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00819 Bma-Chr8:45895131 Bma12g00579 Bma-Chr12:25156246 0 dispersed
Bma03g00497 Bma-Chr3:3899461 Bma08g00819 Bma-Chr8:45895131 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1133 . . . . . . Bma08g00819 . . . . . . . . . Cpe16g00710 Bhi05g01997 . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00916 . . Bma12g00579 . . . . . . . . Cpe05g01034 . . . . . . . . . . . . . . . Csa06g01152 . Cme01g01511
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001509 2 3 3 3 3 2 4 2 2 2 2 2 3 2 2 4 2 4 4 1 2 2 2 2 2 1 2 3 2 2 72
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00819 Bma_Chr08 FPKM 0.0 0.0 7.957495 8.168247 7.977187 8.219583 8.575092 17.604021 19.380259 17.311428