Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00820 ATGCGCACACTTGCATTTCATCCTCGTCCTCAAATTCTCAAAAAAAATTCTCACTTTCAATCCACCCACCACCACTTTTCCTTCCCTGAAGACCGCAGAATTACAAGATTGTGCAATTCAGAGTGCCACCGACGACCCCGATCGGTTTCGCAACCTCGAGCTGTTCGAGAATGGAAAGAGTACGAGGAAGCTGTGAAGCGCAAGGACCTCGCTGGAGCTCTCAGGCTACTAAAATCCATTGAAGGAGAAACCCAAATGGATCCCGTTAATGGCTCTGCTTCTCGCGAGCCTTTTCGGTCCGGAATTGGCGAGTCAGGGTTCATTGATTGGGAAAGGGATTGGGACGTTTTAGATGCTTGTTTGAATGCGGATGACATGAAGCTTGTTGCAAATACTTATGGCTTCCTCAAGGATAGAGGGTTCTTGCCCAATTTCGGCAAATGCAGGAACATTGTCTTGGAAGGATCAAGAGATGTTACCCCATCTGTATTGAAATCTTCTACTGGTTTAGAAGTGTCCAAGTTGTCTCCAAAGAAATGGGGTCTTTCAGGAAGCTCTCAATTAGCATTGCTTGCTTTTCTTGGAGGTACATCGTTTCTTATTTCTCAGGGTATAGATATCAGGCCTAATCTTACAGTAGTATTGGGGCTAGCATTTTTGGACTCTATCTTTCTCGGTGGTACGTGTTTAGCTCAAATATCAAGTTATTGGCCTCCAAATAGACGTCGAATCTTGGTCCACGAAGCTGGCCATCTCTTGATCGCTTATCTGATGGGTTGCCCTATCCGCGGGGTGATTTTGGATCCAATTGTTGCAATGCAAATGGGCATTCAAGGGCAGGCTGGAACTCAATTTTGGGACGAAAAAATGGCTAATGACCTTGCTGAAGGACGTCTGGACGGCTCTTCATTTGACAGATATTGCATGGTGCTTTTTGCAGGAATTGCAGCCGAAGCTCTTGTCTACGGTGATGCCGAGGGGGGAGAAAATGATGAAAATTTCTTCAAAAGTATTTGTGTTCTTTTGCAGCCTCCATTGTCTGTTGCCCAGATGTCAAATCAAGCAAGATGGTCAGTTCTTCAGTCTTTCAATCTGCTCAAGTGGTATAAACGGCCTCATCAAGCAGTTGTTAAAGCTCTGGAAAGTGGGTGCAGTCTTAGTTCCGTGATTCGGAGAATGGAAGAAGCTATCTTAACGAATAGATGA 1206 45.11 MRTLAFHPRPQILKKNSHFQSTHHHFSFPEDRRITRLCNSECHRRPRSVSQPRAVREWKEYEEAVKRKDLAGALRLLKSIEGETQMDPVNGSASREPFRSGIGESGFIDWERDWDVLDACLNADDMKLVANTYGFLKDRGFLPNFGKCRNIVLEGSRDVTPSVLKSSTGLEVSKLSPKKWGLSGSSQLALLAFLGGTSFLISQGIDIRPNLTVVLGLAFLDSIFLGGTCLAQISSYWPPNRRRILVHEAGHLLIAYLMGCPIRGVILDPIVAMQMGIQGQAGTQFWDEKMANDLAEGRLDGSSFDRYCMVLFAGIAAEALVYGDAEGGENDENFFKSICVLLQPPLSVAQMSNQARWSVLQSFNLLKWYKRPHQAVVKALESGCSLSSVIRRMEEAILTNR 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45896902 45899245 - Bma031461 Bma08g00820 87647

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00820 401 PANTHER - 42 399 - -
Bma08g00820 401 Gene3D Peptidase M41 234 340 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Bma08g00820 401 PANTHER ATP-DEPENDENT ZINC METALLOPROTEASE 42 399 - -
Bma08g00820 401 SUPERFAMILY FtsH protease domain-like 237 381 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00820 - - - jre:109011252 569.311
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g01061 Bma-Chr3:12952696 Bma08g00820 Bma-Chr8:45896902 7.92E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1134 . Blo13g00598 . . . . Bma08g00820 . . . . . . . . Cpe04g00863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cpe15g00900 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010209 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 3 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00820 Bma_Chr08 FPKM 27.793011 23.112106 2.959696 2.290629 0.243923 0.0 0.916436 0.0 0.0 0.171395