Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00821 ATGACTATTACTGGTGCGAGTGAAAAACATGCCCTTCATGCTTTGAAAGCTAGTGATTGGCATCTTGAAGGAGCCTTTGATGTATTTTACAGTCAACCTCAGATTAAAACATTTACCGATTCAAGACATTTGGAAGAGCTTTACAATAGATATAAAGGCAAGCTCCCCTTTTTAGCTCACATGATTGATTCCCTTGAAAAATTCCGAGAAAGGATACCATTCATGCGCACAGAGCTCAAAGCTGAACATAAGTTCCGTGAAATCTACCTTTTTGCATTTGGCTGGGCAAAAGAAAAGGGTCAAAAATCTTTGGCGTTGGACACGGCAATAGGAATGTGGCAATTGCTGTTTGCCGATAGAGAGTGGCCTTTGGTTGATCACTGGTGTCAATTCCTACAGGCTCGACACAATAAAGCTATCTCAAGGGACACTTGGTCTCAGCTACTGGAGTTTGCTAGGATGGTAGACGCTACGCTATCAAATTACGATGCTGCCGGGGCTTGGCCTTATCTAATTGACGAATTTGTTGAATACTTGAATGAGAATGGCATTATCCAAAGTGGTCAGTTGAATGAACAAAAACGATGA 588 41.67 MTITGASEKHALHALKASDWHLEGAFDVFYSQPQIKTFTDSRHLEELYNRYKGKLPFLAHMIDSLEKFRERIPFMRTELKAEHKFREIYLFAFGWAKEKGQKSLALDTAIGMWQLLFADREWPLVDHWCQFLQARHNKAISRDTWSQLLEFARMVDATLSNYDAAGAWPYLIDEFVEYLNENGIIQSGQLNEQKR 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 45907827 45911260 - Bma028214.1 Bma08g00821 87648

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00821 195 Pfam Cullin binding 68 178 IPR005176 -
Bma08g00821 195 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 4 52 - -
Bma08g00821 195 PANTHER DEFECTIVE IN CULLIN NEDDYLATION PROTEIN 62 187 - -
Bma08g00821 195 Pfam UBA-like domain 1 32 - -
Bma08g00821 195 Gene3D Cullin, PONY binding domain 81 188 IPR042460 -
Bma08g00821 195 PANTHER RP42 RELATED 4 52 IPR014764 -
Bma08g00821 195 PANTHER RP42 RELATED 62 187 IPR014764 -
Bma08g00821 195 ProSiteProfiles DCUN1 domain profile. 1 180 IPR005176 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00821 K17822 DCUN1D1_2; DCN1-like protein 1/2 - tcc:18594929 315.849
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00495 Bma08g00821 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00821 Bma-Chr8:45907827 Bma10g00821 Bma-Chr10:14375143 5.60E-11 dispersed
Bma03g00495 Bma-Chr3:3884439 Bma08g00821 Bma-Chr8:45907827 1.51E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1150 Blo04g00462 Blo13g00602 . . . . Bma08g00821 . . . . . . . Sed05g1833 Cpe04g00866 . Bhi05g01993 Tan02g0025 . . . . . . . . . . . . . . . . . Csa07g01210 . . . . . . Bpe15g00919 . Bma03g00495 . . . . . . . . Cpe15g00904 . . . . . . . . . . . . . . . . . . Cme01g01501
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003443 1 2 2 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 10 2 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00821 Bma_Chr08 FPKM 11.068289 12.001602 10.616922 11.495784 19.368736 17.563978 19.915598 22.605757 22.938995 22.05941