Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00824 ATGTTTGATAAAGCTGAACTTTCAGTTTCCTCGTACGATACAGCCTGGGTGGCTATGGCCCCATCTCCGACCTCGCCAGGCGCCCCATTATTTCCCCAATGTGTGGACTGGTTAATGGAGAATCAGGCCAGCGACGGCTCATGGAGCAGCGCTGCAGATTCAAAATCGCTGTTAATGAAGGACACTCTATCGTCAACCTTAGCCTGTGTTCTTGCTCTGAAGCGATGGGACGTCGGCCAAGATCGCATGAACAAGGGCCTCAAATTTATTGAGAAAAATTTCGCTTCTGCCACTGATCCTCAGCAACTTTCGCCTCTGGGATTTAATATAGTTTTTCCTGGAATGATTGAGATGGCTCAAAGTCTGGGTTTGACTTTTTCCATGGGAGATGCCAATTTCGATGCTTTGACTCAGGAGAGAGCGATGGAGCTCAGAAGAGGCTTCGAAAGCGAGTCGCGAGGGAGGAGAGCGTATTTAGCTTATGTTTATGAAGGAATTGGGAAGCTACAAAACTGGGAAATGGTCACGAAACATCAAAGGAAGAATGGTTCACTGTTTAACTCCCCCTCAGCTACAGCAACTGCTTTTACTCGCACGAAGGACGATGGATGTCTTAATTATCTCCTCAGTCTATTATCAAAGTTTGGCAATTCAGTTCCGACGATCTATCCTCTAGACGTAAATGCGCGATTGTGCATGGTGGATGAGCTTCAAAGATTAGGGATCGATCGATATTTCTCGAACGAAATCAAAAGTGTGTTGGGCGAAGCTTATGGACTTTGGATGCTGGGAGAGGAAGATATATTCCTCAATGTCACCACTTGTGTAATGGCGTTTCGGTTATTACGGGTTAATGGATACGATGTTTCTTCAGATGTATTCGCTCAATTTTCAGAGGAAGATAAGCTTTCCGATTTTCTTGGAGGGTATCTCGACAAAGTCGGCTCCGCACTAGAATTATTTAAAGCGTCTCAAATTATGTTATATTCGAACGAGAATGTTCTCGAAAAAGCAAATTCTTGGACGAGGAATTTCCTTAATTGTCTGTTGTTGAAAGATACTACACGATCCGAAGGCCTTCAGAATAACAATGAAGAGGCAAGTAAAAGTCCAATGAAGTCTTGTATACAGGTGAAATACGCTCTCAAGTATACGTATAACGCAGCATTAGAACGAATGTCGACCAGAAAAGCAATAGAACATTACAACATAGACAGTACAAAGATCTCAAAAACTTGGTGCTCAAATCTCTACGCTGAAGATTTCCTAAAACTCGCGGTGGAAGACTTCAACATGTGTCAAGATATACACCGAAAAGAGCTACGAGATCTAGAAAGGTGGGTTGTGGAGAAGAGGTTGGACAAGCTAAAGTTTGCCAGGCAGAAACTGGAGTATTGCTACTTTTCGGCTTTTGCAACAATTTTCTCTCCCGAACTTTCGGCCGCTCGTTCGGCATGGACTAAGAGTTCGGTCCTCACGACAGTGATTGATGATTTCTTCGATGTTGGCGGGTCGGAAAAGGAACTAGTTAACTTTATACAACTGGTAGAGAGGTGGGATATAAGTTCAAGTGTGGATTATTGCTCAGAGGCAGTCGAGATAATATTCTCAGCGCTTCATGACACTGTGTGCGAGATTAGCACCGCAGCCTCGACGTGGCAAGGACGAGACGTGACTAGTCACATAATCGATATAGTATGCAATGACTTGTTATTATATCCACTGAAGGAATACGAGTGGACAAGAGACAAGGTAGTGCCACCAATGGACGATTATATGTCGATCAATTGCGTAGGGTTTGCGTTGGGACCTACAATCCTCCCGACCCTCTACTTGGTGGGGCCAAAGCTTTCAGAGGAGGTTGTCGGAAATGCCGAGTACAACAATCTATTAAAAATGACAAGTATTTGCGGCCGTCTTCTCAACGACATCCAGAGTTTTGAGAGGGAGTCAAGGGCGGGAAAACTTAATGCCGTGTCGTTGCTTGTGCTTAACGGCGGCAATACTGGGACTGAAGCAGAAGCGATCGAAGCAAAAAGGGTTTCGATAAACGAGGCGAGAAGAGAATTGCTGAGACTAGTTTTGGCGGAAGAGGGAAGCACCATTCCAAGGGCTTGCAAGGACTTGTTTTGGAAAATGAGCCAGGTTTTGCACCTTTTTTACATGAATGGAGATGGGTTCACCACCGAGGAGAAGATGAAAGATGCAAAGGAGTTAATTGGACAAGCCATGGTTCTAAACCTGCAGAAATTCAAGACTTGCAGAGAGTATGACCATGTTTGA 2283 44.55 MFDKAELSVSSYDTAWVAMAPSPTSPGAPLFPQCVDWLMENQASDGSWSSAADSKSLLMKDTLSSTLACVLALKRWDVGQDRMNKGLKFIEKNFASATDPQQLSPLGFNIVFPGMIEMAQSLGLTFSMGDANFDALTQERAMELRRGFESESRGRRAYLAYVYEGIGKLQNWEMVTKHQRKNGSLFNSPSATATAFTRTKDDGCLNYLLSLLSKFGNSVPTIYPLDVNARLCMVDELQRLGIDRYFSNEIKSVLGEAYGLWMLGEEDIFLNVTTCVMAFRLLRVNGYDVSSDVFAQFSEEDKLSDFLGGYLDKVGSALELFKASQIMLYSNENVLEKANSWTRNFLNCLLLKDTTRSEGLQNNNEEASKSPMKSCIQVKYALKYTYNAALERMSTRKAIEHYNIDSTKISKTWCSNLYAEDFLKLAVEDFNMCQDIHRKELRDLERWVVEKRLDKLKFARQKLEYCYFSAFATIFSPELSAARSAWTKSSVLTTVIDDFFDVGGSEKELVNFIQLVERWDISSSVDYCSEAVEIIFSALHDTVCEISTAASTWQGRDVTSHIIDIVCNDLLLYPLKEYEWTRDKVVPPMDDYMSINCVGFALGPTILPTLYLVGPKLSEEVVGNAEYNNLLKMTSICGRLLNDIQSFERESRAGKLNAVSLLVLNGGNTGTEAEAIEAKRVSINEARRELLRLVLAEEGSTIPRACKDLFWKMSQVLHLFYMNGDGFTTEEKMKDAKELIGQAMVLNLQKFKTCREYDHV 760
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46034044 46037946 - Bma028219.1 Bma08g00824 87651

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00824 760 Gene3D - 3 430 IPR036965 GO:0010333|GO:0016829
Bma08g00824 760 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 11 195 IPR008930 -
Bma08g00824 760 Gene3D Farnesyl Diphosphate Synthase 433 752 IPR008949 -
Bma08g00824 760 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 6 740 - -
Bma08g00824 760 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 181 405 IPR008930 -
Bma08g00824 760 Pfam Terpene synthase family, metal binding domain 423 688 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bma08g00824 760 SUPERFAMILY Terpenoid synthases 421 732 IPR008949 -
Bma08g00824 760 SFLD Terpene Cyclase Like 1 N-term 5 412 - -
Bma08g00824 760 Gene3D - 8 212 - -
Bma08g00824 760 CDD Terpene_cyclase_plant_C1 223 735 IPR044814 GO:0010333|GO:0016102
Bma08g00824 760 Pfam Terpene synthase, N-terminal domain 171 354 IPR001906 GO:0010333|GO:0016829
Bma08g00824 760 PANTHER ENT-KAUR-16-ENE SYNTHASE, CHLOROPLASTIC 6 740 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00824 K04121 E4.2.3.19; ent-kaurene synthase [EC:4.2.3.19] - qsu:112027063 870.152
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma03g00490 Bma08g00824 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00824 Bma-Chr8:46034044 Bma15g00601 Bma-Chr15:7586302 2.65E-73 dispersed
Bma09g00684 Bma-Chr9:44557524 Bma08g00824 Bma-Chr8:46034044 2.26E-12 dispersed
Bma03g00490 Bma-Chr3:3851248 Bma08g00824 Bma-Chr8:46034044 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1165 Blo04g00457 . . . . . Bma08g00824 . . . . . . . . . . Bhi05g01987 . . . . . . . . . . . . . . . . . . Csa07g01217 . . . . . . Bpe15g00924 . Bma03g00490 . . . . . . . . Cpe15g00909 . . . . . . . . . . . . . . . . . Chy01g00846 Cme01g01495
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003981 2 5 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 2 1 2 2 1 1 1 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00824 Bma_Chr08 FPKM 52.550446 58.324772 2.962483 3.606163 1.048845 0.851906 0.980002 0.0 0.0 0.0