Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00825 | ATGAGTTCTCAAGATCAAAGATCTTCCATGTGTGTTCATGGCGACTCCGGCCTAGTCCTCACCACAGACCCCAAACCCCGTCTCCGATGGACCCTCGAGCTCCATACACGCTTTGTCGAGGCTGTCACGCAGCTCGGAGGCCCTGAGAAAGCAACCCCAAAGACCATCATGAGGGTTATGGGTGTGAAGGGTCTAACTCTTTTCCATCTCAAAAGCCACCTTCAGAAATTTAGGCTTGGGAAGCTACCTCATAAAGAATTCACCGATCACTCGATTAAGCATGAACTTTGGCGAAACACGGCGTCTTCGTCCAACGTGGTTGGCCGCGATACGAACGATGACTCGCACATGGTCGATGTAATTAAGATGCAAATGGAGGTGCAGAGAAAACTGCATGAACAGCTAGAGGTGCAAAGGCAGCTTCAACTGAAAATCGAGGCTCAAGGGAAGTACACGCAAAGCATGCTAGAGAATGCTAGTCAAACCCTAGTCAGTGAAAATGTCGATTGGGGAGGATCATCCTTCAAGTCATCGGTTCCATGTTTTGAAGACCTTAACATATGGGGAGGAGATCAGTTTGATCTCGCGGAACCAATGGATGGTTTTCTGCCTATTGACGACGACATTTGTCTTGAAATGACGGAGAGTAGCTCGTGTAGCTATGGGGGAAGGAGCCATCTTCTCTGGTCAGAACGTCTCCAGCTTCATGTGTTAGGAATGGCGGCAGCTTCTGGCGCTTTTCAAGGAGAGAGAATTGCGGATCTATTCTAG | 771 | 48.9 | MSSQDQRSSMCVHGDSGLVLTTDPKPRLRWTLELHTRFVEAVTQLGGPEKATPKTIMRVMGVKGLTLFHLKSHLQKFRLGKLPHKEFTDHSIKHELWRNTASSSNVVGRDTNDDSHMVDVIKMQMEVQRKLHEQLEVQRQLQLKIEAQGKYTQSMLENASQTLVSENVDWGGSSFKSSVPCFEDLNIWGGDQFDLAEPMDGFLPIDDDICLEMTESSSCSYGGRSHLLWSERLQLHVLGMAAASGAFQGERIADLF | 256 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 46047913 | 46049179 | + | Bma028220.1 | Bma08g00825 | 87652 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00825 | 256 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 22 | 82 | IPR017930 | - | |
Bma08g00825 | 256 | TIGRFAM | myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class | 25 | 80 | IPR006447 | GO:0003677 | |
Bma08g00825 | 256 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR APL | 4 | 191 | - | - | |
Bma08g00825 | 256 | SUPERFAMILY | Homeodomain-like | 24 | 79 | IPR009057 | - | |
Bma08g00825 | 256 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 4 | 191 | IPR044848 | GO:0003700 | |
Bma08g00825 | 256 | Pfam | Myb-like DNA-binding domain | 28 | 76 | IPR001005 | - | |
Bma08g00825 | 256 | Gene3D | - | 24 | 82 | - | - | |
Bma08g00825 | 256 | Pfam | MYB-CC type transfactor, LHEQLE motif | 119 | 161 | IPR025756 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g00825 | Bma12g00569 | CCT | |
Bma03g00488 | Bma08g00825 | CCT | |
Bma03g00653 | Bma08g00825 | BCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00825 | Bma-Chr8:46047913 | Bma12g00572 | Bma-Chr12:24868502 | 7.04E-78 | dispersed | |
Bma03g00488 | Bma-Chr3:3841540 | Bma08g00825 | Bma-Chr8:46047913 | 2.71E-103 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57769 | PF00249 | Myb_DNA-binding | 1.30E-05 | CL0123 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00825 | - | - | vri:117908572 | 300.441 |