Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00825 ATGAGTTCTCAAGATCAAAGATCTTCCATGTGTGTTCATGGCGACTCCGGCCTAGTCCTCACCACAGACCCCAAACCCCGTCTCCGATGGACCCTCGAGCTCCATACACGCTTTGTCGAGGCTGTCACGCAGCTCGGAGGCCCTGAGAAAGCAACCCCAAAGACCATCATGAGGGTTATGGGTGTGAAGGGTCTAACTCTTTTCCATCTCAAAAGCCACCTTCAGAAATTTAGGCTTGGGAAGCTACCTCATAAAGAATTCACCGATCACTCGATTAAGCATGAACTTTGGCGAAACACGGCGTCTTCGTCCAACGTGGTTGGCCGCGATACGAACGATGACTCGCACATGGTCGATGTAATTAAGATGCAAATGGAGGTGCAGAGAAAACTGCATGAACAGCTAGAGGTGCAAAGGCAGCTTCAACTGAAAATCGAGGCTCAAGGGAAGTACACGCAAAGCATGCTAGAGAATGCTAGTCAAACCCTAGTCAGTGAAAATGTCGATTGGGGAGGATCATCCTTCAAGTCATCGGTTCCATGTTTTGAAGACCTTAACATATGGGGAGGAGATCAGTTTGATCTCGCGGAACCAATGGATGGTTTTCTGCCTATTGACGACGACATTTGTCTTGAAATGACGGAGAGTAGCTCGTGTAGCTATGGGGGAAGGAGCCATCTTCTCTGGTCAGAACGTCTCCAGCTTCATGTGTTAGGAATGGCGGCAGCTTCTGGCGCTTTTCAAGGAGAGAGAATTGCGGATCTATTCTAG 771 48.9 MSSQDQRSSMCVHGDSGLVLTTDPKPRLRWTLELHTRFVEAVTQLGGPEKATPKTIMRVMGVKGLTLFHLKSHLQKFRLGKLPHKEFTDHSIKHELWRNTASSSNVVGRDTNDDSHMVDVIKMQMEVQRKLHEQLEVQRQLQLKIEAQGKYTQSMLENASQTLVSENVDWGGSSFKSSVPCFEDLNIWGGDQFDLAEPMDGFLPIDDDICLEMTESSSCSYGGRSHLLWSERLQLHVLGMAAASGAFQGERIADLF 256
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46047913 46049179 + Bma028220.1 Bma08g00825 87652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00825 256 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 82 IPR017930 -
Bma08g00825 256 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 25 80 IPR006447 GO:0003677
Bma08g00825 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR APL 4 191 - -
Bma08g00825 256 SUPERFAMILY Homeodomain-like 24 79 IPR009057 -
Bma08g00825 256 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 191 IPR044848 GO:0003700
Bma08g00825 256 Pfam Myb-like DNA-binding domain 28 76 IPR001005 -
Bma08g00825 256 Gene3D - 24 82 - -
Bma08g00825 256 Pfam MYB-CC type transfactor, LHEQLE motif 119 161 IPR025756 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g00825 Bma12g00569 CCT
Bma03g00488 Bma08g00825 CCT
Bma03g00653 Bma08g00825 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00825 Bma-Chr8:46047913 Bma12g00572 Bma-Chr12:24868502 7.04E-78 dispersed
Bma03g00488 Bma-Chr3:3841540 Bma08g00825 Bma-Chr8:46047913 2.71E-103 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57769 PF00249 Myb_DNA-binding 1.30E-05 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00825 - - vri:117908572 300.441