Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00828 ATGGCACCCACCACTCTTCCGCCTGGATTCAGGTTCCATCCTACTGACGAAGAGCTTGTTGCTTACTACTTGGACAGAAAAATCAGTGGCCGTACGATTGAGCTCGAGATTATTCCTGAGATTGACCTCTACAAATGCGAACCATGGGAATTACCAGAAAAGTCGTATCTACCGAGCAAGGATATGGAGTGGTACTTCTACAGCCCGAGGGATCGGAAGTATCCGAACGGGTCGAGAACGAACCGGGCAACCAGAGCCGGATACTGGAAAGCAACGGGGAAAGACCGGCAGGTGAATTCTAATAAGATTCCGGTAGGGATGAAGAAGACATTGGTGTATTATAAAGGAAGGGCTCCTCATGGGATGAGGAGTAATTGGGTTATGCATGAGTATCGGCTTATTCATTCCGCTAGTGGAACTTCTTCTTCTCCGACATCATCCTTAAAGGATTCTTATGCATTGTGTCGAGTTTTCAAGAAAACAGCGCTACCAATGGCGAAATCAAAACGGAAAGACGCAGTTTCGAGTGATCTGAAAGACCAAGATCAATTATTAGGGGACGATGATAATGGATTGGAAATTTCAAGATCTGAGACTGAAAATGAACAAGACAGTTCCATTCTTGAATTTGCAAAATTTCCTATTTCGGATGCGTCTTCTTCTGAAGTCACTCAAGGGACAACCCTAGAAACTACCACCACCAAGGGTTGCTTGCAAGCTTCGTATTTGGCCGCCGACGAAGCAAACAGCGTCTCCGATTTCTATTTTCTTGGAGTAGACTGCTCATCAAACCTAATTCAGGATCTTCAAACTCCAAATTACGCAAGTCTGCAGACTCAACTCCCTTATTCGCCATTAGAACTTGAGGATTTTCCAGATCATGATCAAACCATAGAGGAATACACGTCGTACGATAAACTCAGAGATTATATGAATGGGACAATAGAAGAGATTTTATCCCTATGCTCTTCTCAAGACAACTCCAGCTCCCAGCTTCCATTGCAACAGTACTGA 1014 44.28 MAPTTLPPGFRFHPTDEELVAYYLDRKISGRTIELEIIPEIDLYKCEPWELPEKSYLPSKDMEWYFYSPRDRKYPNGSRTNRATRAGYWKATGKDRQVNSNKIPVGMKKTLVYYKGRAPHGMRSNWVMHEYRLIHSASGTSSSPTSSLKDSYALCRVFKKTALPMAKSKRKDAVSSDLKDQDQLLGDDDNGLEISRSETENEQDSSILEFAKFPISDASSSEVTQGTTLETTTTKGCLQASYLAADEANSVSDFYFLGVDCSSNLIQDLQTPNYASLQTQLPYSPLELEDFPDHDQTIEEYTSYDKLRDYMNGTIEEILSLCSSQDNSSSQLPLQQY 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46122609 46125179 - Bma028224.1 Bma08g00828 87655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00828 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 86-LIKE 1 164 - -
Bma08g00828 337 MobiDBLite consensus disorder prediction 169 204 - -
Bma08g00828 337 SUPERFAMILY NAC domain 4 160 IPR036093 GO:0003677|GO:0006355
Bma08g00828 337 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
Bma08g00828 337 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 1 164 - -
Bma08g00828 337 Gene3D NAC domain 15 163 IPR036093 GO:0003677|GO:0006355
Bma08g00828 337 ProSiteProfiles NAC domain profile. 6 160 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma02g00568 Bma-Chr2:11849574 Bma08g00828 Bma-Chr8:46122609 1.00E-27 dispersed
Bma08g00828 Bma-Chr8:46122609 Bma12g01263 Bma-Chr12:45669076 2.75E-86 dispersed
Bma08g00828 Bma-Chr8:46122609 Bma04g00387 Bma-Chr4:3119146 5.49E-61 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57770 PF02365 NAM 8.60E-39 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00828 - - qsu:112007212 408.297