Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00830 ATGACGGGCAATGGACAACTGACGGTGCCTCCTGGGTTTAGATTCCACCCCACGGATGAAGAGCTTCTGCACTATTATCTCAGAAAGAAGGTCTCTTACGAGGCCATCGACCTTGATGTGATTAGGGAAGTTGATCTCAACAAGCTCGAGCCTTGGGACCTTAAAGAAAAATGTAGAGTTGGAAGTGGGCAACAGAGTGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACTGGTACTCGAACAAATAGGGCAACCATGGCTGGATTTTGGAAGGCGACTGGGAGGGACAAACCCATCCATCTCCCTGAATACTCCAAGAAAATCGGCATGAGGAAGACCCTCGTTTTCTACACCGGCCGGGCACCTCACGGCCAGAAAACCGATTGGATCATGCATGAATATCGGCTCGACGATCAAAACAACGACCAAATTCAGGAGGAAGGCTGGGTTGTCTGTAGGGTATTCAAGAAGAAGAACTACAACCGAACCTTCCACCCAGATTCTTCTTCTCCAGAGAACTTTAATTACCAGAAGGCAAGCACAAGTCCAGGCAGATTAATCCTAGAGACGACGAAACATAATCAAATTCAAGCTGCTTCGACTGATTACAGCTTCGGCGCTTCCCCGCATCTGCCGCAGCTGCTGAGCCCAGATTCAGTCGTGGCAGCTCCGTCTTTCGGATCATCAATTTCTTCGAACGCAGGGGTGGTGGGATCAGCTGGGTATCCTCAATTCTGTAGAAGCTCGCAGTGGGAGAGGTTTGGAGATTGGTCGCTATTGGACAAGCTTCTTGCTTCGAGCTCCAACAATGGAGTCGATCAGAATAAGTGGAGCAAAGGGGTAGGTTTGAATTTCCACAATTTAAGTGATGATGTCAGGGGTTCAACTCAGAATTTGCTGTTTCAATACGTTGGAGCAGGAGCAGGAACTGGAAGTACAAGTACAGAGACCGAGGTTTTGAAATTCCATAGGCAGTCATGA 990 48.18 MTGNGQLTVPPGFRFHPTDEELLHYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKEKCRVGSGQQSEWYFFSHKDKKYPTGTRTNRATMAGFWKATGRDKPIHLPEYSKKIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDQNNDQIQEEGWVVCRVFKKKNYNRTFHPDSSSPENFNYQKASTSPGRLILETTKHNQIQAASTDYSFGASPHLPQLLSPDSVVAAPSFGSSISSNAGVVGSAGYPQFCRSSQWERFGDWSLLDKLLASSSNNGVDQNKWSKGVGLNFHNLSDDVRGSTQNLLFQYVGAGAGTGSTSTETEVLKFHRQS 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 46144396 46146522 - Bma028226.1 Bma08g00830 87657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00830 329 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 5 282 - -
Bma08g00830 329 Pfam No apical meristem (NAM) protein 10 139 IPR003441 GO:0003677|GO:0006355
Bma08g00830 329 PANTHER PROTEIN SOMBRERO 5 282 - -
Bma08g00830 329 ProSiteProfiles NAC domain profile. 9 160 IPR003441 GO:0003677|GO:0006355
Bma08g00830 329 Gene3D NAC domain 18 165 IPR036093 GO:0003677|GO:0006355
Bma08g00830 329 SUPERFAMILY NAC domain 5 160 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00830 Bma-Chr8:46144396 Bma14g00099 Bma-Chr14:1370119 2.09E-86 dispersed
Bma08g00830 Bma-Chr8:46144396 Bma07g01031 Bma-Chr7:41597762 4.53E-87 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57771 PF02365 NAM 1.40E-37 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00830 - - pop:7464581 380.948