Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00875 ATGGAAGATATGAAGTTTTCAGCCTCGCAGTCCAACAATTCTCCTACAGACGGGGAAGAGGGAGATAATATTGAAGCTCGATTCTCAGATTTTTGCAAGAACGGTCTCTCTCTTGATGGCAACTCTCATGCTCAAGCTTTAAAGCTCTTCGGGGAAATTAAACACTTTATTTTGACAAATATGACAACTATAGGGAGCGGAGCACTTAAAGAAACAGAGCGGTATTGGTTTGCATTTATTTTATACTCTGTGAAAAGGTTGTGCAAAAATAATGTAGATAGTCCACAGCAGGGATCTGATGAAAGTAGGTTGAACTTAAGCCACATTTTAAGGAAAGCAAAGCTGAACATTATCGATTTTTTCAAAGAGTTGCCTCAATTTGTTGTGAAGGCAGGTCCTATTTTAAGTAGAATGTATGGTTCAGATTGGGAAAGCAGACTTGAGGCAAAGGAGTTGCAAGCTAATTTTGTGCACCTGAGTATTTTAAGCAAGTACTATAAACGTGTATACCAGGAATTCTTCACTATCGATGCTGATGCCAATAAGCAGCCAACTACTCTTAGTTCCCTAGATTATGTTTCAGACTACCAACAATTTGGCTGGTTGCTATTTTTGGCACTCCGAGTACACACATTTAGCCGTTTCAAAGACTTAGTGACTTGCACCAATGGCCTACTTTCTATTTTGGCTATCTTGATAATTCACCTTCCTGTCCGATTCAGAAACTTCAACATACTTGAATCTCAACGCTTTGTTAAGAAAGGCGATGGTAGAGTAGACCTGATTGGATCACTTTGCAACCTGTATGAAACCTCAGAAGAAGAATTGAGGAAAACAATGGAAAAGGCTAATAATCTGATTGAAGACATTTTGAAGAAGAAATCATGTCCAGCTTCTGAATGTTCTAGTGAATGTCTGAAGAATATTGATACAGATGGTTTGACGCACTTTGAAGATCTGATGGAGGCATCATCTTTATCATCGAGTTTAGATATTTTAGAGAAGGATTATGAAAATGCAGTTCGGAATAAGGGTGAATTTGATGAGAGAGTATTCATCTATGTAGAAGACAGCTTACTTGGTTCAGGAAATTTGTCTGCGGGTGCCACTAATATAATTGGTGTCAAGAGAAATTTTGATTTAATGGCATCGCCTGGTAGGACATTAACAAGCCCTCTGTCTCCTCTTCGTTCCCCTGCTTCTCATGCCAATGGTATTCACGGAGTTGCTAACTGTAAAATGGCAGCAACACCAGTTAGCACAGCAATGACAACAGCAAAGTGGCTACGTACTGTTATTTCTCCACTTCCAGCTAAACCCTCAGCTGAGTTAGAGCACTTTCTGGCTTCTTGTGATAGAGATGTAACTAATGACGTAGTTCGTAGGGCACTTATTATATTAGAGGCCATATTTCCTACTAGTTCTCGTGGAGATCATTGTATAGCTGGTAACTTACATAGTGCAAACCTCATGGACAACATTTGGGCCGAGCAACGAAGACTAGAAGCACTGAAGTTATATTACCGAGTTTTGGAAGCAATGTGCAGAGCAGAGGCTCAAATATTGCATGCGAATAATTTGACCTCTCTACTAACCAATGAGAGGTTCCATAGGTGTATGTTGGCCTGTTCTGCCGAACTTGTTCTAGCAACACACAAAACTGTTACGATGTTGTTTCCTGCAGTGTTGGAAAGGATTGGCATTACAGCCTTTGATCTTAGCAAGGTGATAGAGAGTTTCATAAGACATGAAGAATCTCTTCCAAGAGAATTGAGGCGACACTTGAATTCATTGGAAGAACGACTGTTGGAGAGTATGGTGTGGGAAAAGGGTTCATCAATGTATAATTTTTTGATAGTTGCTAAACCAGGTCTTACAACAGAAATAAACCGTCTAGGGTTTTTAGCAGAACCGATGCCGTCTTTGGATGCTATTGCATTGCTCATAAACTTTTCTGGTGTTGGGTTGCCCCCTGTGCTTAATTTACAAAAGCATGGGATCGTCCAAGGTCAGAATGGAGATATTAGGTCTCCAAAAAGATTGTGCCCAGATTATCGAAGCGGGTTAGTGGAGCGAAATTCCTATACTTCTCCAGTGAAGGAGCGACTAATGTGCTTTAGTAACCTTAAATCAAAGTTACTGCCACCTGCTTTACAGTCCGCCTTTGCGAGTCCTACACGTCCTAATCCTGGAGGTGGAGGGGAAACATGTGCTGAAACTGGAATTAACATATTCTTTAGCAAAATTGTAAAGCTGGCTGCGGTTAGAATCAGTGGTATGGTTGAAAGGCTGAAACTTTCTCAGCAGATACGGGAGGATGTCTACAACCTTTTTCAACAAATCCTAAATCAGGAGACTTCACTTCTTTTCAATCGTCACATTGACCAGATCATCCTTTGCTGTTTCTATGGCATTACAAAGATTTCTCCAAAAAAATTGACATTTAGAGAAATCATTGACAAATATAGGATGCAACCACACTTCAAAACACAAGTTTTTTGCAGTGTTTTTGTTGATTGGTCGCCTGCCCGCCGTAACGGAAGAACCGGTCAGGATCATGTTGATATAATCAAATTCTATAATGAAATGTTCATCCCTGTTGTGAAACCTCTGCTGGTCAACTTTGGCCCTGCTGGTCCTACTACAAAAACTAATAGAGTTCTTGAGGGTTCCAGCAATAATGATGCACCAAGTCCTGGATCGCCGAAAAGATCTCCTTTCCCAAGTCTTCCTGATATGTCTCCCAAAAAAGTTTCTGCTGCACATAATGTCTACGTCTCTCCGTTAAGATCATCAAAGATGGATGCCTTAATTTCACACAGCTCCAAAAGCTATTATGCTTGTGTTGGAGAGAGTACTCATGCATATCAGAGCCCTTCAAAAGACTTGACTGTCATAAACAACCGCTTAAATGGGACTCGGAAGCTCCGTGGAACGCTCAATTTTGACGATGTCGATGTTGGTTTGGTGAGTGATTCAATGGTTGCCAACAGCCTTTACCTTCAAAATGGGAGCTGTGCATCTTCGTCGGGCACGCCAATTAAATCGGAACAACCTGACTCCTGA 3066 40.9 MEDMKFSASQSNNSPTDGEEGDNIEARFSDFCKNGLSLDGNSHAQALKLFGEIKHFILTNMTTIGSGALKETERYWFAFILYSVKRLCKNNVDSPQQGSDESRLNLSHILRKAKLNIIDFFKELPQFVVKAGPILSRMYGSDWESRLEAKELQANFVHLSILSKYYKRVYQEFFTIDADANKQPTTLSSLDYVSDYQQFGWLLFLALRVHTFSRFKDLVTCTNGLLSILAILIIHLPVRFRNFNILESQRFVKKGDGRVDLIGSLCNLYETSEEELRKTMEKANNLIEDILKKKSCPASECSSECLKNIDTDGLTHFEDLMEASSLSSSLDILEKDYENAVRNKGEFDERVFIYVEDSLLGSGNLSAGATNIIGVKRNFDLMASPGRTLTSPLSPLRSPASHANGIHGVANCKMAATPVSTAMTTAKWLRTVISPLPAKPSAELEHFLASCDRDVTNDVVRRALIILEAIFPTSSRGDHCIAGNLHSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERIGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNFLIVAKPGLTTEINRLGFLAEPMPSLDAIALLINFSGVGLPPVLNLQKHGIVQGQNGDIRSPKRLCPDYRSGLVERNSYTSPVKERLMCFSNLKSKLLPPALQSAFASPTRPNPGGGGETCAETGINIFFSKIVKLAAVRISGMVERLKLSQQIREDVYNLFQQILNQETSLLFNRHIDQIILCCFYGITKISPKKLTFREIIDKYRMQPHFKTQVFCSVFVDWSPARRNGRTGQDHVDIIKFYNEMFIPVVKPLLVNFGPAGPTTKTNRVLEGSSNNDAPSPGSPKRSPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTVINNRLNGTRKLRGTLNFDDVDVGLVSDSMVANSLYLQNGSCASSSGTPIKSEQPDS 1021
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47056348 47062837 - Bma028281.1 Bma08g00875 87702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00875 1021 Gene3D - 196 353 - -
Bma08g00875 1021 SUPERFAMILY Cyclin-like 740 909 IPR036915 -
Bma08g00875 1021 SMART DUF3452_2 87 235 IPR024599 -
Bma08g00875 1021 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 15 1008 IPR028309 GO:0006357|GO:0051726
Bma08g00875 1021 SUPERFAMILY Cyclin-like 425 620 IPR036915 -
Bma08g00875 1021 Coils Coil 330 350 - -
Bma08g00875 1021 Pfam Domain of unknown function (DUF3452) 98 235 IPR024599 -
Bma08g00875 1021 Gene3D - 704 909 - -
Bma08g00875 1021 Coils Coil 269 293 - -
Bma08g00875 1021 Gene3D - 420 608 - -
Bma08g00875 1021 MobiDBLite consensus disorder prediction 1 19 - -
Bma08g00875 1021 Pfam Retinoblastoma-associated protein B domain 742 869 IPR002719 GO:0005634|GO:0051726
Bma08g00875 1021 Pfam Retinoblastoma-associated protein A domain 417 618 IPR002720 GO:0005634|GO:0051726
Bma08g00875 1021 MobiDBLite consensus disorder prediction 1 21 - -
Bma08g00875 1021 MobiDBLite consensus disorder prediction 883 900 - -
Bma08g00875 1021 SMART RB_A_2 417 618 IPR002720 GO:0005634|GO:0051726
Bma08g00875 1021 MobiDBLite consensus disorder prediction 883 915 - -
Bma08g00875 1021 PANTHER BNACNNG22930D PROTEIN 15 1008 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00875 Bma-Chr8:47056348 Bma08g00878 Bma-Chr8:47300572 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57776 PF01858 RB_A 1.60E-64 CL0065 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00875 K04681 - csv:101219810 1527.3