Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00878 ATGGATAGGATGGAAGATATGAAATTTTCAGCCTCGCAGTCCAACAATTCTCATACAGATGGGGAAGAGGGAGATAATATTGAAGCTCGATTCTCAGATTTTTGCAAGAACGGGCTCTCTCTTGATGACAACTCTCATGCTCAAGCTTTGAAGCTCTTCGGGGAAACTAAACACTTTCTTTTGACAAATATGACAACTCTAGGGAGTGGAGCACTTGAAGAAGCAGAGCGGTATTGGTTTGCATTTATTTTATACTCTGTGAAAAGGTTGAGCAAAAATAATGCAGATAGTCCACAGCAGGGATCTGATGACGGTGGGCTGAACTTATGCCACATTTTAAGGAAAGCAAAGCTGAACATTGTTGATTTTTTCAAAGAGTTGCCTCAATTTGTTGTAAAGGCAGGTCCTATTTTAAGTAGAATGTATGGTTCAGATTGGGAAAGTAGACTTGAGGCAAAGGAGTTGCAAGCTAATTTTGTGCACCTGAGTATTTTAAGCAAGTACTATAAACGTGTATACCAGGAATTCTTCACTATCGATGCTAATGCCAATAAGCAGCCAACTACTCTCAGTTCCCTAGGTTATGTTTCAGATTACCAACAATTTGGATGGTTGCTATTTTTGGCACTTCGAGTACACACATTTAGCCGTTTTAAAGACTTAGTGACTTGTACGAATGGCCTACTTTCTATTTTGGCTATCTTGATAATTCACCTTCCCGTCCGCTTCAGAAACTTCAACATACTTGAATCTCAACGCTTTGTTAAGAAAGGCGATGGTAGAATAGACCTGATTGGATCACTTTGCAACCTGTACGAAACCTCAGAAGAAGAATTGAGGAAAACAATAGAAAAGACTAATAATCTGATTGAAGACATTTTGAAGAAGAAATCATGTCCAGCTTCTGAATGTTCTAGTGAATGTCTGAAGAATATTGATACAGATGGTTTGACGCACTTTGAAGATCTGATGGAAGAATCATCTTTATCATCGAGTTTAGATATTTTAGAGAAGGATTATGAAAATGCAGTTCGGAATAAGGGTGAATTTGATGAGAGAGTATTCATCTATGAAGAAGACAGCTTACTTGGTTCAGGAAGTTTGTCTGCTGGTGCCACTAATATAATTGGTGTCAAGAGAAATTTTGATTTAATGGCATCGCCTGCTAGAACAATAACAAGCCCTCTGTCTCCTCTTCGTTCCCCTGCTTCTCATGCCAATGGTATTCACGGAGTTGCTAACTCTAAGATGGCAGCAACACCAGTAAGCACGGCAATGACAACAGCAAAATGGCTACGTACTGTTATTTCTCCACTTCCAGCTAAAGCCTCAGCTGAGTTAGGGCACTTTCTGGCTTCTTGTGATAGAGATGTAACTAATGACGTAGTTTGTAGGGCACTTATTATATTAGAGGCCATATTTCCTACTAGTTCTCGTGGAGATCATTGTAGAGCTGGTAACTTACATAGTGCAAACCTCATGGACAACATTTGGGCCGAGCAACGAAGACTAGAAGCACTGAAGTTATATTACCGAGTTTTGGAAGCAATGTGCAGAGCAGAGGCTCAAATATTGCATGCGAATAATTTAACTTCTCTACTAACCAATGAGAGGTTCCATAGGTGTATGTTGGCCTGTTCTGCCGAACTTGTTTTGGCAACACACAAAACTGTTACGATGTTGTTTCCTGCAGTGTTGGAAAGGACTGGCATTACAGCCTTTGATCTTAGCAAGGTGATAGAGAGTTTCATAAGACATGAAGAATCTCTTCCAAGAGAATTGAGGCGACACTTGAATTCATTGGAAGAACGACTGCTGGAGAGTATGGTGTGGGAAAAAGGTTCATCAATGTACAATTCCTTGATAGTTGCAAAACCAGGTCTTACAACAGAAATAAACCGTCTAGGGTTTTTAGCAGAACCAATGCCATCTTTGGATGCTATTGCATTGCTCATAAACTTTTCTGGTGTTGGGTTGCCCCCTGTGCTTAATTTACAAAAGCATGAGATCGTCCTAGGTCAGAATGGAGATATTAGGTCTCCAAAAAGATTGTGCCCAGATTATCGAAGTGTGTTAGTGGAGCGAAATTCCTATACTTCTCCAGTGAAGGAGCGACTAATGTGCTTTAGTAACCTTAAATCAAAGTTACTGCCACCTCCTTTACAGTCCGCCTTTGCGAGTCCTACACGTCCTAATCCTGGAGGTGGAGGGGAAACATGTGCTGAAACTGGAATTAACATATTCTTTAGCAAAATTGTAAAGCTGGCTGCGGTTAGAATCAGTGGTATGGTTGAAAGGCTGAAACTTTCTCAGCAGATACGGGAGGATGTCTACAACCTATTTCAACAAATCCTAAATCAGGAGACTTCACTTCTTTTCAATCGTCACATTGACCAGATCATCCTTTGCTGTTTCTATGGCATTACAAAGATTTCTCCAAAAAAATTGACATTTAGAGAAATCATTGACAAATATAGGATGCAACCACACTTCAAAACACAAGTTTTTTGCAGTGTTTTTGTTGATTGGTCGCCTGCCCGCCGTAACGGAAGAACCGGTCAGGATCATGTTGATATAATCAAATTCTATAATGAAATGTTCATCCCTGTTGTGAAACCTCTGCTGGTCAACTTTGGCCCTGCTGGTCCTACTACAAAAACTAATAGAGTTCTTGAGGGTTCCAGCAATAATGATGCACCAAGTCCTGGATCGCCGAAAAGATCTCCTTTCCCAAGTCTTCCTGATATGTCTCCCAAAAAAGTTTCTGCTGCACATAATGTCTACGTCTCTCCGTTAAGATCATCAAAGATGGATGCCTTAATTTCACACAGCTCCAAAAGCTATTATGCTTGTGTTGGAGAGAGTACTCATGCATATCAGAGCCCTTCAAAAGACTTGACTGCCATAAACAACCGCTTAAATGGGACTCGGAAGCTCCGTGGAATGCTCAATTTTGACGATGTAGATGTTGGTTTGGTGAGTGATTCAATGGTTGCTAGCAGCCTTTACCTTCAAAACGGGAGCTGTGCATCTTCGTCGGGCACGCCAATTAAATCGGAACAACCCGACTCCTGA 3075 40.85 MDRMEDMKFSASQSNNSHTDGEEGDNIEARFSDFCKNGLSLDDNSHAQALKLFGETKHFLLTNMTTLGSGALEEAERYWFAFILYSVKRLSKNNADSPQQGSDDGGLNLCHILRKAKLNIVDFFKELPQFVVKAGPILSRMYGSDWESRLEAKELQANFVHLSILSKYYKRVYQEFFTIDANANKQPTTLSSLGYVSDYQQFGWLLFLALRVHTFSRFKDLVTCTNGLLSILAILIIHLPVRFRNFNILESQRFVKKGDGRIDLIGSLCNLYETSEEELRKTIEKTNNLIEDILKKKSCPASECSSECLKNIDTDGLTHFEDLMEESSLSSSLDILEKDYENAVRNKGEFDERVFIYEEDSLLGSGSLSAGATNIIGVKRNFDLMASPARTITSPLSPLRSPASHANGIHGVANSKMAATPVSTAMTTAKWLRTVISPLPAKASAELGHFLASCDRDVTNDVVCRALIILEAIFPTSSRGDHCRAGNLHSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHANNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWEKGSSMYNSLIVAKPGLTTEINRLGFLAEPMPSLDAIALLINFSGVGLPPVLNLQKHEIVLGQNGDIRSPKRLCPDYRSVLVERNSYTSPVKERLMCFSNLKSKLLPPPLQSAFASPTRPNPGGGGETCAETGINIFFSKIVKLAAVRISGMVERLKLSQQIREDVYNLFQQILNQETSLLFNRHIDQIILCCFYGITKISPKKLTFREIIDKYRMQPHFKTQVFCSVFVDWSPARRNGRTGQDHVDIIKFYNEMFIPVVKPLLVNFGPAGPTTKTNRVLEGSSNNDAPSPGSPKRSPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKLRGMLNFDDVDVGLVSDSMVASSLYLQNGSCASSSGTPIKSEQPDS 1024
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 47300572 47405777 - Bma031464 Bma08g00878 87705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00878 1024 MobiDBLite consensus disorder prediction 886 903 - -
Bma08g00878 1024 Gene3D - 703 912 - -
Bma08g00878 1024 SMART RB_A_2 420 621 IPR002720 GO:0005634|GO:0051726
Bma08g00878 1024 Coils Coil 272 296 - -
Bma08g00878 1024 MobiDBLite consensus disorder prediction 886 918 - -
Bma08g00878 1024 Gene3D - 423 611 - -
Bma08g00878 1024 Pfam Domain of unknown function (DUF3452) 100 238 IPR024599 -
Bma08g00878 1024 SUPERFAMILY Cyclin-like 743 912 IPR036915 -
Bma08g00878 1024 Pfam Retinoblastoma-associated protein A domain 420 621 IPR002720 GO:0005634|GO:0051726
Bma08g00878 1024 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 23 1011 IPR028309 GO:0006357|GO:0051726
Bma08g00878 1024 SMART DUF3452_2 90 238 IPR024599 -
Bma08g00878 1024 MobiDBLite consensus disorder prediction 1 24 - -
Bma08g00878 1024 SUPERFAMILY Cyclin-like 428 623 IPR036915 -
Bma08g00878 1024 Gene3D - 199 356 - -
Bma08g00878 1024 Coils Coil 333 353 - -
Bma08g00878 1024 PANTHER BNACNNG22930D PROTEIN 23 1011 - -
Bma08g00878 1024 Pfam Retinoblastoma-associated protein B domain 745 872 IPR002719 GO:0005634|GO:0051726
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00875 Bma-Chr8:47056348 Bma08g00878 Bma-Chr8:47300572 0 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57777 PF01858 RB_A 5.00E-63 CL0065 Bma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00878 K04681 - csv:101219810 1530.38