Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00920 ATGGGGTTTTCTACTCGCTGCATTCTCTTGATATGCCTTTTGAGCTTCATTTTTCCCATTTCTATGGCGGCCCTGAATCTCACCCTCCCTCACCAGCACCCATACCCTGATGCTGTTTCTGAAGAAGTTCATAGGAGAGTAAATGATTCTCTAACCAGAAGGGAAATGCTGAATCTCCAATCTAAGAACCAAGCTAACCCATCCTGTCTCACCGGGAACCCAATCGATGACTGCTGGCGGTGCGACAAAAACTGGCGAACAAACCGGCAAAGGTTCGCCGATTGCGGCATTGGGTTCGGCCAAGACGCCATGGGAGGAAAAGGCGGCCAGATCTACTCGGTCACCGACTCTTCAGATTCAAATCCAGCAAACCCCACTCCGGGAACTCTACGATACGCTGTCATACAAGACGAACCCCTCTGGATCATCTTCTCCGCCGACATGACCATCAACCTAAAACACGAGCTCATCTTCAACAGCTTCAAAACCATCGATGGCCGGGGCGCCAACGTTCACATCACCGGTGGCGGGTGCATCACCCTTCAGTACGTCTCAAACGTAATAATCCACAACATCAACATCCACCATTGTAGGCCAACTGGAAATACCAACATACGGTCGAGTCCAACCCAAATCCAGTACCGTAGCAAATCAGACGGCGACGGCATCTCCATCTTCGGCTCGCGCAAAATCTGGATCGACCATTGCTCACTCTCCTACTGCAAAGATGGCCTGATCGACGCAATAATGGGGTCCACCGGAATAACAGTATCGAACAACTACTTCTCGCATCATGATGAGGTGATGTTGTTGGGCCACGACGATAAGTATGAACCAGATTCTGGGATGCAGGTGACCATAGCTTTCAATCACTTCGGTGTAGCGCTGGTACAACGTATGCCTCGGTGTAGACGAGGGTACATACACGTTGTGAATAATGATTACACGGAGTGGGAGATGTATGCCATCGGCGGTAGTGCCAACCCTACCATAAACAGTCAGGGAATAGATACACTGCCCCGGCGGACTACTAATGCCAAAGAGGTGACGAGGCGTTTGGACACTGGAGAAGTGGAGTGGACGGATTGGAACTGGAGGACGGTGGGTGACGTAATGGCGAACGGAGCATTCTTCGTTCCCTCCGGTGATGGTCTTAGCAGCCTCTACTCTAAAGCTTACAGTGTCGACCCCAAATCAGCTGGTCTGATTGACCAGATAACCATCAACGCCGGTGCGTTTGGTGGGCCCAGGTAA 1254 51.12 MGFSTRCILLICLLSFIFPISMAALNLTLPHQHPYPDAVSEEVHRRVNDSLTRREMLNLQSKNQANPSCLTGNPIDDCWRCDKNWRTNRQRFADCGIGFGQDAMGGKGGQIYSVTDSSDSNPANPTPGTLRYAVIQDEPLWIIFSADMTINLKHELIFNSFKTIDGRGANVHITGGGCITLQYVSNVIIHNINIHHCRPTGNTNIRSSPTQIQYRSKSDGDGISIFGSRKIWIDHCSLSYCKDGLIDAIMGSTGITVSNNYFSHHDEVMLLGHDDKYEPDSGMQVTIAFNHFGVALVQRMPRCRRGYIHVVNNDYTEWEMYAIGGSANPTINSQGIDTLPRRTTNAKEVTRRLDTGEVEWTDWNWRTVGDVMANGAFFVPSGDGLSSLYSKAYSVDPKSAGLIDQITINAGAFGGPR 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48179296 48180950 + Bma028342.1 Bma08g00920 87747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00920 417 PANTHER PECTATE LYASE 10 416 - -
Bma08g00920 417 Gene3D - 72 414 IPR012334 -
Bma08g00920 417 SUPERFAMILY Pectin lyase-like 63 400 IPR011050 -
Bma08g00920 417 SMART amb_all 147 340 IPR002022 -
Bma08g00920 417 Pfam Pectate lyase 155 325 IPR002022 -
Bma08g00920 417 PANTHER PECTATE LYASE 18-RELATED 10 416 IPR045032 GO:0030570
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Bma08g00920 417 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00585 Bma-Chr4:5602715 Bma08g00920 Bma-Chr8:48179296 0 dispersed
Bma08g00920 Bma-Chr8:48179296 Bma04g01050 Bma-Chr4:19126066 3.10E-172 dispersed
Bma03g00061 Bma-Chr3:510136 Bma08g00920 Bma-Chr8:48179296 0 wgd
Bma03g00362 Bma-Chr3:2697882 Bma08g00920 Bma-Chr8:48179296 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00920 K01728 - nnu:104604548 654.44