Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00933 ATGGAGTATCCGAGCTGCAACAATGGCCGAGAAGAACCCATAAGCCTCTGCAAAGCAGCGGACCCTTTGAACTGGGGGGCTGCAGCGGAGGGGATGAGAGGGAGCCACTTGGAGGAGGTGAAGCGGATGGTGGAGGAATATCGGAAGGCGGAGGTTCGGCTGGGCGGTGAGACGCTGACGATAGGTCAAGTGGCAGCCATTGCCGCCACTGAGGGGGCCGTGAAAGTGGAGCTTTCGGAAGAGACGAGGGAGAGAGTGAAGGCTAGCAATGAATGGGTGCTTGAGAGCATGAACAAGGGGACTGATAGCTATGGCGTCACAACTGGCTTTGGTGCAACCTCCCACAGACGGACCAAGCAGGGTGGTGCTCTTCAAAAGGAGCTTATCAGGTTTTTGAACGCTGGAATTTTTGGAAATGGAAGAGAAAATAGACAAACGCTGCCTCACACAGTGAGCAGAGCAGCAATGTTGGTGAGAATCAACACCCTTCTACAGGGCTACTCAGGCATCAGATTTGAGATTCTCGAAGCCATTACTAAGCTCCTTAACCATAACATTACTCCTTGTCTTCCTCTCCGAGGCACCATTACTGCTTCTGGAGATTTAGTTCCTCTCTCCTACATTGCAGCAGGGCTGTTGACGGGAAGGCCAAACTCAAAAGCCGTTGGACCAAAAGGGGAGTCTCTCAATGCTTCTGAGGCCTTTCAGCTGGCTGAGATAAGTGGAGGCTTTTTCGAGCTGCAGCCGAAAGAGGGTCTTGCTCTTGTCAACGGCACGGCTGTTGGGTCTGGTTTAGCTTCCACGGTTCTTTTCGAGACCAACATTTTGACGATTCTTGCCGAGGTTTTATCAGCCATTTTCGCGGAAGTTATGCAAGGAAAGCCGGAATTTACCGATCATTTGACGCATAAACTGAAGCATCATCCCGGTCAAATCGAAGCTGCAGCCATAATGGAGCACATATTAGATGGAAGCTCTTATGTTAAATCAGCTCAGAAAGTCCATGAAATTGATCCCCTCCAAAAGCCAAAGCAAGATAGATATGCTCTAAGAACATCTCCTCAATGGCTAGGACCTCTAATCGAAGTTATCCGAATGGCCACCAAGATGATCGAAAGGGAAATCAACTCCGTCAATGATAACCCATTAATTGACGTTTCGAGAAACAAGGCTTTACACGGGGGGAATTTCCAAGGGACCCCAATTGGCGTCTCGATGGATAATACTCGCCTAGCCATCGCTGCGATCGGAAAGCTTATGTTCGCTCAATTTTCAGAGCTGGTCAACGACTTCTACAACAATGGGCTGCCTTCAAATCTCTCGGCCGGTCGAAATCCGAGCTTGGACTACGGATTCAAAGGTGCTGAAATAGCCATGGCGTCTTACTGCTCAGAGCTTCAATTCTTGGCCAATCCAGTCACAAACCATGTGCAAAGCGCAGAGCAACACAACCAAGACGTGAACTCTCTGGGCTTAATTTCTGCAAGAAAAACAGCGGAAGCAGTAGAAATATTAAAGCTCATGTCGTCAACTTTCTTAGTGGCATTATGTCAAGCAGTTGATCTGCGCCACTTAGAGGAAAACCTGAAGAATGCAGTGAAGAACACAGTTGGCCAAGTATCAAAGAAGGTCTTAATAATGGGTTTTAGCGGAGAACTCCACCCAATCAGATTCTGTGAAAAAGACTTGCTCAAAGTCGTAGAAAGAGAACATGTCTATTCCTACATTGACGACCCTTGCAGCGCTACATACCCATTAATCCAAAAACTCAGACAAGTTTTGGTAGACCAAGCTCTCAGCAATGGCGACAGAGAGAGAAATTCAAGCACGTCCATTTTCCAGAAAATCGGAGATTTTGAGGAAGAGCTGAGGACCCTCTTGCCTAAAGAAGTGGAAAACGCGAGGAAAGAGTACGAAAATGGAAACCCGGCGATTCAAAACCAGATCAAGGAGTGCAGATCGTACCCATTGTACAAGTTCGTGAGAGAAACATTGGGGACGGAGCTTCTGACCGGAGAGGAAGTTAGATCGCCCGGCGAAGAATTCGACAAAGTTTTCTCTGCAATTTGTGATGGGAAACTGATCGATCCATTGCTGGAGTGTTTGAAAGAGTGGAACGGTGCTCCTCTTCCTATATGTTAG 2142 47.9 MEYPSCNNGREEPISLCKAADPLNWGAAAEGMRGSHLEEVKRMVEEYRKAEVRLGGETLTIGQVAAIAATEGAVKVELSEETRERVKASNEWVLESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGRENRQTLPHTVSRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAAGLLTGRPNSKAVGPKGESLNASEAFQLAEISGGFFELQPKEGLALVNGTAVGSGLASTVLFETNILTILAEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYVKSAQKVHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRMATKMIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIAAIGKLMFAQFSELVNDFYNNGLPSNLSAGRNPSLDYGFKGAEIAMASYCSELQFLANPVTNHVQSAEQHNQDVNSLGLISARKTAEAVEILKLMSSTFLVALCQAVDLRHLEENLKNAVKNTVGQVSKKVLIMGFSGELHPIRFCEKDLLKVVEREHVYSYIDDPCSATYPLIQKLRQVLVDQALSNGDRERNSSTSIFQKIGDFEEELRTLLPKEVENARKEYENGNPAIQNQIKECRSYPLYKFVRETLGTELLTGEEVRSPGEEFDKVFSAICDGKLIDPLLECLKEWNGAPLPIC 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48345611 48348436 - Bma028353.1 Bma08g00933 87760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00933 713 Pfam Aromatic amino acid lyase 59 535 IPR001106 -
Bma08g00933 713 PANTHER PHENYLALANINE AMMONIA-LYASE 1-LIKE 18 713 - -
Bma08g00933 713 SUPERFAMILY L-aspartase-like 21 713 IPR008948 GO:0003824
Bma08g00933 713 CDD PAL-HAL 57 523 IPR001106 -
Bma08g00933 713 Gene3D - 526 647 IPR023144 -
Bma08g00933 713 PANTHER HISTIDINE AMMONIA-LYASE 18 713 IPR001106 -
Bma08g00933 713 Gene3D Fumarase/aspartase (Central domain) 260 708 - -
Bma08g00933 713 TIGRFAM phe_am_lyase: phenylalanine ammonia-lyase 21 703 IPR005922 GO:0005737|GO:0006559|GO:0016841
Bma08g00933 713 Gene3D - 14 259 IPR024083 -
Bma08g00933 713 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 194 210 IPR022313 GO:0016841
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00343 Bma08g00933 CCT
Bma03g00343 Bma08g00933 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00602 Bma-Chr4:5744694 Bma08g00933 Bma-Chr8:48345611 0 dispersed
Bma04g00605 Bma-Chr4:5782649 Bma08g00933 Bma-Chr8:48345611 0 dispersed
Bma03g00343 Bma-Chr3:2569170 Bma08g00933 Bma-Chr8:48345611 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00933 K10775 - pop:7479878 1201.81