Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00947 ATGGGAAAGAAAGGAAGTTGGTTTTGTGCAGTGACAAAGGCTCTCGGTTCTGAATCTAAGGAAAAGAAAGATCAGAAAACTCAGAAAACAAAGAGAAAATGGTTTGGAAAGAATAAGAAAACAGATGTGATTACTTTTTTGGAAGAAACAACTCCATTGCCTCTTCCTTCGCCACTTCCAGCTCTAGAAGACGTGAAATTGACAAATGTTGAGAATGAACAAAGCAAGCACGCCTACTCTGTGGCACTTGCCACCGCAGCTGCAGCAGAGGCTGCTGTAGCGGCCGCTCAGGCAGCGGCCGAGGTTGTTCGTCTGACCACTATTCCTCGTTTCGTGGGAAAATCAAAAGACGAAATAGCAGCCATCAAAATTCAAACAGCATTTCGTGGATATTTGGCGAGAAGAGCTTTGCGAGCATTAAGAGGGCTTGTACGGTTGAAAATGCTGATGGAAGGGCCATCTGTAAAACGGCAAGTGGCTTCCTCGTTGAGATCCATGCAGACACTTGCACGTTTGCAATCACAGATTTGTTCGAGGAGGCTCAGAATGTCGGAGGAGAATCAGGCTCTTCAGCTTCAACTTCAGCGGAAACATGAAAAAGAACTTGCAAAATTAAGAGCTTCTATTGGTGAAGAATGGGATGATAGAACACAGTCAAAGGAGCAAGTTGAAGCCAAAATACTCAACAAGCAAGAAGCTGCTTTGAGAAGAGAAAGGGCTCTAGCATATGCTTTCTCTCATCAGCAAACTTGGAAGAACTCTTCGAAAGCAGCGAACCAAACGTTCATGGATCCGATCAACCCTCACTGGGGTTGGAGCTGGTTGGAGCGATGGATGGCATCTCGGCCATGGGAGGCAAAAAACGTAATTGATTACCACGATCATACGACTCCAAATCACAGAGCTTCTATTGGAGACGCCAACAAAGCGTATACCCGTCGAGATCTCAACCTCGAACTCAAGAATTCCCTTTGGACTCCGCCTAGCCAAAAGTCAAGCAGACCTCCGAGCCGCCAGTCCCCGTCGACTCCTTCAAAGGCACCGTCATCTTCGTCTGTGTCGAGGAAAATAAAGCCGTCCAGCCCGAGAGGTAGCGGATGGGGTGGAGACAACGACTCTAGAAGTGTATATAGTGTCACTTCAGACAGGTGCCGGAGACACAGCATTGCAGGGTCATCAGTCAGAGACGATGAAAGTTTAGTCAGCTCGGCTTCAGTTCCGAGCTATATGGGAGCCACAGAGTCCGCAAAGGCAAAGTCTCGATTTTCAAGCCCTGCCGGAGTGGACAAAGCTACTAGTACGCCCGAGAAGGAATCGGCTGGTCATGTGAAGAAGAGGTTGTCTTTCTCGTCGTCCCCAGCCCCCCCGAGGAGGCATTCTGGCCCTCCCGTGATCAATACGAGCGCCGTTAATAATTCTTGA 1422 48.31 MGKKGSWFCAVTKALGSESKEKKDQKTQKTKRKWFGKNKKTDVITFLEETTPLPLPSPLPALEDVKLTNVENEQSKHAYSVALATAAAAEAAVAAAQAAAEVVRLTTIPRFVGKSKDEIAAIKIQTAFRGYLARRALRALRGLVRLKMLMEGPSVKRQVASSLRSMQTLARLQSQICSRRLRMSEENQALQLQLQRKHEKELAKLRASIGEEWDDRTQSKEQVEAKILNKQEAALRRERALAYAFSHQQTWKNSSKAANQTFMDPINPHWGWSWLERWMASRPWEAKNVIDYHDHTTPNHRASIGDANKAYTRRDLNLELKNSLWTPPSQKSSRPPSRQSPSTPSKAPSSSSVSRKIKPSSPRGSGWGGDNDSRSVYSVTSDRCRRHSIAGSSVRDDESLVSSASVPSYMGATESAKAKSRFSSPAGVDKATSTPEKESAGHVKKRLSFSSSPAPPRRHSGPPVINTSAVNNS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48453472 48589078 + Bma031472 Bma08g00947 87774

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00947 473 PANTHER IQ-DOMAIN 5-RELATED 1 470 - -
Bma08g00947 473 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 470 - -
Bma08g00947 473 Gene3D - 28 143 - -
Bma08g00947 473 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Bma08g00947 473 MobiDBLite consensus disorder prediction 322 473 - -
Bma08g00947 473 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Bma08g00947 473 MobiDBLite consensus disorder prediction 395 410 - -
Bma08g00947 473 SMART iq_5 116 138 IPR000048 GO:0005515
Bma08g00947 473 MobiDBLite consensus disorder prediction 322 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00947 - - - cmax:111487231 526.168
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bma08g01144 Bma08g00947 CCT
Bma08g00947 Bma08g01144 ECH
Bma08g01144 Bma08g00947 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00947 Bma-Chr8:48453472 Bma08g01144 Bma-Chr8:50511458 3.14E-105 dispersed
Bma08g00947 Bma-Chr8:48453472 Bma04g01643 Bma-Chr4:52333556 2.43E-118 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g474 . Blo13g00915 . Bda15g00176 . . . Bma08g01144 . Cmo04g01429 Cma04g01355 Cma18g00883 Car04g01432 Car18g00808 . Cpe13g00819 Cpe09g00427 . . . . . . . Cla05g02129 Cam05g2284 Cec05g2305 . . . Cre05g2265 . Cone5ag0328 . Cone18ag0502 Lsi02g01698 . Chy10g01339 Cme10g00057 Blo13g00730 . . . Bpe04g01873 . . Bma08g00947 . Cmo04g02721 Cmo15g00445 Cma04g02600 Cma15g00434 Car04g02506 Car15g00406 Cpe01g01224 Cpe01g02257 . . . . . . . . . . . . . . Lsi04g00055 Csa05g01776 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma04g01643 . 47 376 IQD Protein Family AT5G03040 57.2 3.0e-87 319.3
Bma10g00020 . 1 238 IQD Protein Family AT5G03040 56.3 1.1e-57 221.1
Bma08g00947 CCT,ECH 1 469 IQD Protein Family AT3G52290 51.2 1.1e-91 334.0
Bma07g01423 BCT,CCT 1 387 IQD Protein Family AT3G22190 58.7 2.0e-98 356.3
Bma14g00379 BCT,CCT 1 391 IQD Protein Family AT3G22190 55.0 5.2e-86 315.1
Bma01g02209 . 1 433 IQD Protein Family AT2G26180 57.3 1.2e-114 410.2
Bma11g01010 . 1 274 IQD Protein Family AT2G33990 52.6 8.6e-63 237.3
Bma10g00484 . 1 133 IQD Protein Family AT3G15050 63.2 6.7e-44 174.5
Bma02g01259 . 247 675 IQD Protein Family AT4G00820 57.3 2.6e-106 382.9
Bma04g00927 . 1 231 IQD Protein Family AT4G00820 57.3 3.6e-52 203.0
Bma02g01259 . 254 675 IQD Protein Family AT1G01110 55.1 1.3e-102 370.5
Bma04g00927 . 1 231 IQD Protein Family AT1G01110 53.1 8.8e-43 171.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005280 2 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 6 1 0 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g00947 Bma_Chr08 FPKM 51.275963 60.65815 83.961815 91.577576 81.44001 79.263054 81.691338 103.139091 105.318031 104.449532