Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00947 ATGGGAAAGAAAGGAAGTTGGTTTTGTGCAGTGACAAAGGCTCTCGGTTCTGAATCTAAGGAAAAGAAAGATCAGAAAACTCAGAAAACAAAGAGAAAATGGTTTGGAAAGAATAAGAAAACAGATGTGATTACTTTTTTGGAAGAAACAACTCCATTGCCTCTTCCTTCGCCACTTCCAGCTCTAGAAGACGTGAAATTGACAAATGTTGAGAATGAACAAAGCAAGCACGCCTACTCTGTGGCACTTGCCACCGCAGCTGCAGCAGAGGCTGCTGTAGCGGCCGCTCAGGCAGCGGCCGAGGTTGTTCGTCTGACCACTATTCCTCGTTTCGTGGGAAAATCAAAAGACGAAATAGCAGCCATCAAAATTCAAACAGCATTTCGTGGATATTTGGCGAGAAGAGCTTTGCGAGCATTAAGAGGGCTTGTACGGTTGAAAATGCTGATGGAAGGGCCATCTGTAAAACGGCAAGTGGCTTCCTCGTTGAGATCCATGCAGACACTTGCACGTTTGCAATCACAGATTTGTTCGAGGAGGCTCAGAATGTCGGAGGAGAATCAGGCTCTTCAGCTTCAACTTCAGCGGAAACATGAAAAAGAACTTGCAAAATTAAGAGCTTCTATTGGTGAAGAATGGGATGATAGAACACAGTCAAAGGAGCAAGTTGAAGCCAAAATACTCAACAAGCAAGAAGCTGCTTTGAGAAGAGAAAGGGCTCTAGCATATGCTTTCTCTCATCAGCAAACTTGGAAGAACTCTTCGAAAGCAGCGAACCAAACGTTCATGGATCCGATCAACCCTCACTGGGGTTGGAGCTGGTTGGAGCGATGGATGGCATCTCGGCCATGGGAGGCAAAAAACGTAATTGATTACCACGATCATACGACTCCAAATCACAGAGCTTCTATTGGAGACGCCAACAAAGCGTATACCCGTCGAGATCTCAACCTCGAACTCAAGAATTCCCTTTGGACTCCGCCTAGCCAAAAGTCAAGCAGACCTCCGAGCCGCCAGTCCCCGTCGACTCCTTCAAAGGCACCGTCATCTTCGTCTGTGTCGAGGAAAATAAAGCCGTCCAGCCCGAGAGGTAGCGGATGGGGTGGAGACAACGACTCTAGAAGTGTATATAGTGTCACTTCAGACAGGTGCCGGAGACACAGCATTGCAGGGTCATCAGTCAGAGACGATGAAAGTTTAGTCAGCTCGGCTTCAGTTCCGAGCTATATGGGAGCCACAGAGTCCGCAAAGGCAAAGTCTCGATTTTCAAGCCCTGCCGGAGTGGACAAAGCTACTAGTACGCCCGAGAAGGAATCGGCTGGTCATGTGAAGAAGAGGTTGTCTTTCTCGTCGTCCCCAGCCCCCCCGAGGAGGCATTCTGGCCCTCCCGTGATCAATACGAGCGCCGTTAATAATTCTTGA 1422 48.31 MGKKGSWFCAVTKALGSESKEKKDQKTQKTKRKWFGKNKKTDVITFLEETTPLPLPSPLPALEDVKLTNVENEQSKHAYSVALATAAAAEAAVAAAQAAAEVVRLTTIPRFVGKSKDEIAAIKIQTAFRGYLARRALRALRGLVRLKMLMEGPSVKRQVASSLRSMQTLARLQSQICSRRLRMSEENQALQLQLQRKHEKELAKLRASIGEEWDDRTQSKEQVEAKILNKQEAALRRERALAYAFSHQQTWKNSSKAANQTFMDPINPHWGWSWLERWMASRPWEAKNVIDYHDHTTPNHRASIGDANKAYTRRDLNLELKNSLWTPPSQKSSRPPSRQSPSTPSKAPSSSSVSRKIKPSSPRGSGWGGDNDSRSVYSVTSDRCRRHSIAGSSVRDDESLVSSASVPSYMGATESAKAKSRFSSPAGVDKATSTPEKESAGHVKKRLSFSSSPAPPRRHSGPPVINTSAVNNS 473
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48453472 48589078 + Bma031472 Bma08g00947 87774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00947 473 PANTHER IQ-DOMAIN 5-RELATED 1 470 - -
Bma08g00947 473 PANTHER PROTEIN IQ-DOMAIN 1-LIKE 1 470 - -
Bma08g00947 473 Gene3D - 28 143 - -
Bma08g00947 473 ProSiteProfiles IQ motif profile. 117 145 IPR000048 GO:0005515
Bma08g00947 473 MobiDBLite consensus disorder prediction 322 473 - -
Bma08g00947 473 Pfam IQ calmodulin-binding motif 120 138 IPR000048 GO:0005515
Bma08g00947 473 MobiDBLite consensus disorder prediction 395 410 - -
Bma08g00947 473 SMART iq_5 116 138 IPR000048 GO:0005515
Bma08g00947 473 MobiDBLite consensus disorder prediction 322 359 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g01144 Bma08g00947 CCT
Bma08g00947 Bma08g01144 ECH
Bma08g01144 Bma08g00947 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00947 Bma-Chr8:48453472 Bma08g01144 Bma-Chr8:50511458 3.14E-105 dispersed
Bma08g00947 Bma-Chr8:48453472 Bma04g01643 Bma-Chr4:52333556 2.43E-118 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00947 - - cmax:111487231 526.168