Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00949 ATGGATAAATCTCAAGTAGCTTCGCCCCCGAGAACACCCACTGCTCTTACTCGTCCACCCCCATTTCTATATTCTCCCTCTTCTTCCTCTTCCCCGCCGGCCTTTTCCTCGCCCACTTCTCTGTCTTCTCCCCCGAGCAATGTCCGGTCTCCTCCGGCGATCGTACTCAGCCCATGCGCCGCTTGCAAAATCCTCCGGCGGAGATGCGTCGACAAGTGCGTTTTAGCTCCGTATTTTCCTCCATCTGAACCTCTCAAGTTCACCACTGCTCACAGAGTCTTTGGAGCTAGCAATATCATCAAGTTTTTGCAGGATCTTCCAGAGGATCAAAGAGCAGATGCAGTGAGCAGCATGGTGTACGAAGCAAACGCGAGAATCAGAGACCCGGTGTACGGCAGCGCCGGCGCCATTTGCCACCTCCAGAAACAAGTGAGCGAGCTTCAGACCCAGCTTGCCAGAGCCCAGGCCGACCTACTCAACATGCAGCTGCAGCAAAGTAATCTCATTGCCATGTTATGTAAGGAAATAGACCACTCCGACCAAACTCCGGCGTCATTTTTCAACTCTAATCCGAACTCCGTCGACACTACCTGTTTTCTCGATGATTCTTACGCCTGGGAACCTCTCTGGACATGA 636 52.67 MDKSQVASPPRTPTALTRPPPFLYSPSSSSSPPAFSSPTSLSSPPSNVRSPPAIVLSPCAACKILRRRCVDKCVLAPYFPPSEPLKFTTAHRVFGASNIIKFLQDLPEDQRADAVSSMVYEANARIRDPVYGSAGAICHLQKQVSELQTQLARAQADLLNMQLQQSNLIAMLCKEIDHSDQTPASFFNSNPNSVDTTCFLDDSYAWEPLWT 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48484112 48485207 - Bma028373.1 Bma08g00949 87776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00949 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 42 210 - -
Bma08g00949 211 Coils Coil 144 164 - -
Bma08g00949 211 MobiDBLite consensus disorder prediction 1 47 - -
Bma08g00949 211 ProSiteProfiles LOB domain profile. 57 158 IPR004883 -
Bma08g00949 211 Pfam Lateral organ boundaries (LOB) domain 58 155 IPR004883 -
Bma08g00949 211 MobiDBLite consensus disorder prediction 21 47 - -
Bma08g00949 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00327 Bma-Chr3:2448170 Bma08g00949 Bma-Chr8:48484112 1.61E-94 dispersed
Bma08g00949 Bma-Chr8:48484112 Bma08g01029 Bma-Chr8:49439546 9.73E-52 dispersed
Bma08g00949 Bma-Chr8:48484112 Bma08g00958 Bma-Chr8:48612668 7.95E-155 proximal
Bma14g00470 Bma-Chr14:5340036 Bma08g00949 Bma-Chr8:48484112 2.26E-73 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57781 PF03195 LOB 1.70E-40 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00949 - - qsu:111999436 256.144