Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00951 ATGGCGGAGGCTCCGACGAGTCCAGGCGGTGGGAGTCACGAGAGTGGCGGTGAGCAAAGTCCGGGTACCGTTGTGCGGGAACAAGATCGATATCTTCCGATCGCTAATATTAGCAGGATCATGAAGAAGGCGTTGCCTGCAAATGGAAAAATCGCTAAAGATGCCAAGGACACCGTCCAAGAATGCGTCTCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGCCAGAAAGAGAAGAGGAAGACGATCAATGGTGACGATTTGTTATGGGCAATGGCAACTTTAGGATTTGAGGACTATATTGATCCCCTTAAGGTGTATCTAAATAGATACAGAGAGTTTTGGCAGGGTGACGCCAAAGGGTCTGCTAGAGGTGGGGATGACTCTGCTAAACGAGATGCAGTTGGTGTCCTTCCTAATCCAAATTCACAGGTTTAG 447 48.99 MAEAPTSPGGGSHESGGEQSPGTVVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREFWQGDAKGSARGGDDSAKRDAVGVLPNPNSQV 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48493663 48494907 - Bma028376.1 Bma08g00951 87778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00951 148 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bma08g00951 148 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bma08g00951 148 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bma08g00951 148 SUPERFAMILY Histone-fold 28 134 IPR009072 GO:0046982
Bma08g00951 148 MobiDBLite consensus disorder prediction 122 148 - -
Bma08g00951 148 Gene3D Histone, subunit A 22 138 IPR009072 GO:0046982
Bma08g00951 148 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma08g00951 148 MobiDBLite consensus disorder prediction 1 27 - -
Bma08g00951 148 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 147 - -
Bma08g00951 148 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Bma08g00951 148 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma03g00324 Bma-Chr3:2432115 Bma08g00951 Bma-Chr8:48493663 4.76E-11 dispersed
Bma04g00620 Bma-Chr4:5889874 Bma08g00951 Bma-Chr8:48493663 2.17E-74 dispersed
Bma08g00951 Bma-Chr8:48493663 Bma08g01142 Bma-Chr8:50456198 1.78E-73 dispersed
Bma08g00951 Bma-Chr8:48493663 Bma08g00961 Bma-Chr8:48622251 6.45E-110 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57782 PF00808 CBFD_NFYB_HMF 4.00E-28 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00951 K08065 - pop:7469769 252.292