Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00958 ATGGATAAATCTCAAGTAGCTTCGCCCCCGAGAACACCCACTGCTCTTACTCGTCCACCCCCATTTCTATATTCTCCCTCTTCTTCCTCTTCCCCGCCGGCCTTTGCCTCGCCCACTTCTCTGTCTTCTCCCCCGAGCAATGTCCGGTCTCCTCCGGCGATCGTACTCAGCCCATGCGCCGCTTGCAAAATCCTCCGGCGGAGATGCGTGGACAAGTGCGTTTTAGCTCCGTATTTTCCTCCATCTGAACCTCTCAAGTTCACCACTGCTCACAGAGTCTTTGGAGCTAGCAATATCATCAAGTTTTTGCAGGATCTTCCAGAGGATCAAAGAGCAGATGCAGTGAGCAGCATGGTGTACGAAGCAAACGCGAGAATCAGAGACCCAGTGTACGGCAGCGCCGGCGCCATTTGCCACCTCCAGAAACAAGTGAGCGAGCTTCAGACCCAGCTGGCCAGAGCTCAGGCCGACCTACTCAACATGCAGCTGCAGCAAAGTAATCTCATTGCCATGTTATGTAAGGAAATAGACCACTCCGACCAAACTCCGGCCTCATTTTTCAACTCTAATCCGAACTCCGTCGACACTACCTGTTTTCTCGATGATTCTTACTCCTGGGAGCCTCTCTGGACATGA 636 52.67 MDKSQVASPPRTPTALTRPPPFLYSPSSSSSPPAFASPTSLSSPPSNVRSPPAIVLSPCAACKILRRRCVDKCVLAPYFPPSEPLKFTTAHRVFGASNIIKFLQDLPEDQRADAVSSMVYEANARIRDPVYGSAGAICHLQKQVSELQTQLARAQADLLNMQLQQSNLIAMLCKEIDHSDQTPASFFNSNPNSVDTTCFLDDSYSWEPLWT 211
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48612668 48613786 - Bma028389.1 Bma08g00958 87785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00958 211 Coils Coil 144 164 - -
Bma08g00958 211 MobiDBLite consensus disorder prediction 1 47 - -
Bma08g00958 211 ProSiteProfiles LOB domain profile. 57 158 IPR004883 -
Bma08g00958 211 Pfam Lateral organ boundaries (LOB) domain 58 155 IPR004883 -
Bma08g00958 211 MobiDBLite consensus disorder prediction 21 47 - -
Bma08g00958 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 42 210 - -
Bma08g00958 211 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 42 210 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00327 Bma08g00958 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00958 Bma-Chr8:48612668 Bma14g00470 Bma-Chr14:5340036 3.34E-73 dispersed
Bma08g00949 Bma-Chr8:48484112 Bma08g00958 Bma-Chr8:48612668 7.95E-155 proximal
Bma03g00327 Bma-Chr3:2448170 Bma08g00958 Bma-Chr8:48612668 9.74E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57783 PF03195 LOB 1.70E-40 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00958 - - qsu:111999436 256.529