Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00961 | ATGGCGGAGGCTCCGACGAGTCCAGGCGGTGGGAGTCACGAGAGTGGCGGTGAGCAAAGTCCGGGTACCGTTGTGCGGGAACAAGATCGATATCTTCCGATCGCTAATATTAGCAGGATCATGAAGAAGGCGTTGCCTGCAAATGGAAAAATCGCTAAAGATGCCAAGGACACCGTCCAAGAATGCGTCTCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGCCAGAAAGAGAAGAGGAAGACGATCAATGGTGACGATTTGTTATGGGCAATGGCAACTTTAGGATTTGAGGACTATATTGATCCCCTTAAGGTGTATCTAAATAGATACAGAGAGTTTTGGCAGGGTGACGCCAAAGGGTCTGCTAGAGGTGGGGATGACTCTGCTAAACGAGATGCAGTTGGTGTCCTTCCTAATCCAAATTCACAGGTTTAG | 447 | 48.99 | MAEAPTSPGGGSHESGGEQSPGTVVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREFWQGDAKGSARGGDDSAKRDAVGVLPNPNSQV | 148 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 48622251 | 48623666 | - | Bma028392.1 | Bma08g00961 | 87788 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00961 | 148 | PRINTS | CCAAT-binding transcription factor subunit A signature | 78 | 96 | - | - | |
Bma08g00961 | 148 | PRINTS | CCAAT-binding transcription factor subunit A signature | 59 | 77 | - | - | |
Bma08g00961 | 148 | PRINTS | CCAAT-binding transcription factor subunit A signature | 97 | 115 | - | - | |
Bma08g00961 | 148 | SUPERFAMILY | Histone-fold | 28 | 134 | IPR009072 | GO:0046982 | |
Bma08g00961 | 148 | MobiDBLite | consensus disorder prediction | 122 | 148 | - | - | |
Bma08g00961 | 148 | Gene3D | Histone, subunit A | 22 | 138 | IPR009072 | GO:0046982 | |
Bma08g00961 | 148 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 1 | 147 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Bma08g00961 | 148 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Bma08g00961 | 148 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED | 1 | 147 | - | - | |
Bma08g00961 | 148 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 31 | 95 | IPR003958 | - | |
Bma08g00961 | 148 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 62 | 78 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma08g01142 | Bma08g00961 | CCT | |
Bma08g00961 | Bma08g01142 | ECH | |
Bma08g01142 | Bma08g00961 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00961 | Bma-Chr8:48622251 | Bma12g00846 | Bma-Chr12:39281855 | 2.58E-58 | dispersed | |
Bma03g00879 | Bma-Chr3:8582910 | Bma08g00961 | Bma-Chr8:48622251 | 1.47E-18 | transposed | |
Bma04g00620 | Bma-Chr4:5889874 | Bma08g00961 | Bma-Chr8:48622251 | 2.17E-74 | transposed | |
Bma08g00951 | Bma-Chr8:48493663 | Bma08g00961 | Bma-Chr8:48622251 | 6.45E-110 | transposed | |
Bma08g01142 | Bma-Chr8:50456198 | Bma08g00961 | Bma-Chr8:48622251 | 1.66E-64 | transposed | |
Bma09g00661 | Bma-Chr9:44215882 | Bma08g00961 | Bma-Chr8:48622251 | 4.04E-17 | transposed | |
Bma03g00324 | Bma-Chr3:2432115 | Bma08g00961 | Bma-Chr8:48622251 | 4.76E-11 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57784 | PF00808 | CBFD_NFYB_HMF | 4.00E-28 | CL0012 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00961 | K08065 | - | pop:7469769 | 252.292 |