Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00961 ATGGCGGAGGCTCCGACGAGTCCAGGCGGTGGGAGTCACGAGAGTGGCGGTGAGCAAAGTCCGGGTACCGTTGTGCGGGAACAAGATCGATATCTTCCGATCGCTAATATTAGCAGGATCATGAAGAAGGCGTTGCCTGCAAATGGAAAAATCGCTAAAGATGCCAAGGACACCGTCCAAGAATGCGTCTCTGAATTCATCAGCTTCATCACCAGCGAGGCGAGCGATAAGTGCCAGAAAGAGAAGAGGAAGACGATCAATGGTGACGATTTGTTATGGGCAATGGCAACTTTAGGATTTGAGGACTATATTGATCCCCTTAAGGTGTATCTAAATAGATACAGAGAGTTTTGGCAGGGTGACGCCAAAGGGTCTGCTAGAGGTGGGGATGACTCTGCTAAACGAGATGCAGTTGGTGTCCTTCCTAATCCAAATTCACAGGTTTAG 447 48.99 MAEAPTSPGGGSHESGGEQSPGTVVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKVYLNRYREFWQGDAKGSARGGDDSAKRDAVGVLPNPNSQV 148
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48622251 48623666 - Bma028392.1 Bma08g00961 87788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00961 148 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bma08g00961 148 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bma08g00961 148 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bma08g00961 148 SUPERFAMILY Histone-fold 28 134 IPR009072 GO:0046982
Bma08g00961 148 MobiDBLite consensus disorder prediction 122 148 - -
Bma08g00961 148 Gene3D Histone, subunit A 22 138 IPR009072 GO:0046982
Bma08g00961 148 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 147 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma08g00961 148 MobiDBLite consensus disorder prediction 1 27 - -
Bma08g00961 148 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 147 - -
Bma08g00961 148 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Bma08g00961 148 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g01142 Bma08g00961 CCT
Bma08g00961 Bma08g01142 ECH
Bma08g01142 Bma08g00961 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00961 Bma-Chr8:48622251 Bma12g00846 Bma-Chr12:39281855 2.58E-58 dispersed
Bma03g00879 Bma-Chr3:8582910 Bma08g00961 Bma-Chr8:48622251 1.47E-18 transposed
Bma04g00620 Bma-Chr4:5889874 Bma08g00961 Bma-Chr8:48622251 2.17E-74 transposed
Bma08g00951 Bma-Chr8:48493663 Bma08g00961 Bma-Chr8:48622251 6.45E-110 transposed
Bma08g01142 Bma-Chr8:50456198 Bma08g00961 Bma-Chr8:48622251 1.66E-64 transposed
Bma09g00661 Bma-Chr9:44215882 Bma08g00961 Bma-Chr8:48622251 4.04E-17 transposed
Bma03g00324 Bma-Chr3:2432115 Bma08g00961 Bma-Chr8:48622251 4.76E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57784 PF00808 CBFD_NFYB_HMF 4.00E-28 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00961 K08065 - pop:7469769 252.292