Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g00963 | ATGTTGGATCTGAACTTTTATGTTACCCGTAGTGATTCAATGGAGGACCTCCACGATTTCCCTGCTAATTTTGCTGCCCAACTGGAAGATTCTGGCACTTCCAATTCCTCCATTGTTAATGCGGAAGAAGCTGCAGCTCCAAGCTATAATGGAAAAGATGAAGATTCTCTTAACACCGCCACTGGATTCATTTTCGACATCATGAGGGGAAAGAAAGAAAGCGAAGGCGCGAGTTGGGTAGTGGATGAAAACGCATCGTCGAAACTTGTAACGCAGCCTCTTTTTTCGGTCGCCGGAAACGGGAGAGACTGGGATTCGGAGCTTCGTTTGGGGTTATCCACCTTAGCGAGATCTCCGTGGCTAAACTTGTCGTTCTCCAACTCCAGTAGCGGAGTACAGGAGGTGAAAAGTCCTCGGCAAAAGCAACAGGTAGTGAGGAAAAGCCGGCGAGGTCCACGCTCCCGGAGCTCTCAGTACCGTGGCGTCACTTTTTACCGGCGAACCGGCCGCTGGGAATCACATATCTGGGACTGTGGGAAGCAAGTGTATTTAGGTGGATTTGACACTTCTCATGCGGCAGCAAGAGCATATGATAGAGCTGCAATTAAATTCAGAGGAACAGATGCTGATATTAATTTCAACACCAGCGATTATGAAGAAGATATAGAACAGACGAAGAACTTGACGAAGGAGGAATTCGTGTACGTTCTTCGTCGCCATAGCAGCAGATTCTCTCGAGGAAGCTCGAACATTCAAGCCTCTACGCTTCGAAAACATGGGCAATGGGAGAATGACGACGATCTTGATCTGAGTCTTGGGATTTCGAAAAATTCAGAAGTTTTAATCGGAAACGGGAGAATGGGATTCATGGATTGCCATTTTAATGGCGGTGACAAGTTCAGCGCAGAGAGAACACAGGACCATTGTTCCCTGATGGACGGCTCTGATACGTCACGTGTGGATGGACCTAGGCGACAGCCTCAGACTGCTGCAATGGTTGCACACCAGCCTTTCATTTTTGGCAGCTTCCAAGGTTTACACCAGTTTTCGTCGTCTTCTTCTTCTTCTTCCCCTGTGCCGATATTCACCATTGCAGCAGCATCATCAGGATTCTCTTCCTTCACCACCCACCGTCTCTAA | 1140 | 48.07 | MLDLNFYVTRSDSMEDLHDFPANFAAQLEDSGTSNSSIVNAEEAAAPSYNGKDEDSLNTATGFIFDIMRGKKESEGASWVVDENASSKLVTQPLFSVAGNGRDWDSELRLGLSTLARSPWLNLSFSNSSSGVQEVKSPRQKQQVVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTSHAAARAYDRAAIKFRGTDADINFNTSDYEEDIEQTKNLTKEEFVYVLRRHSSRFSRGSSNIQASTLRKHGQWENDDDLDLSLGISKNSEVLIGNGRMGFMDCHFNGGDKFSAERTQDHCSLMDGSDTSRVDGPRRQPQTAAMVAHQPFIFGSFQGLHQFSSSSSSSSPVPIFTIAAASSGFSSFTTHRL | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 48627500 | 48629034 | - | Bma028394.1 | Bma08g00963 | 87790 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g00963 | 379 | Pfam | AP2 domain | 158 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Bma08g00963 | 379 | Gene3D | AP2/ERF domain | 157 | 216 | IPR036955 | GO:0003700|GO:0006355 | |
Bma08g00963 | 379 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED | 1 | 374 | - | - | |
Bma08g00963 | 379 | CDD | AP2 | 158 | 216 | IPR001471 | GO:0003700|GO:0006355 | |
Bma08g00963 | 379 | ProSiteProfiles | AP2/ERF domain profile. | 158 | 214 | IPR001471 | GO:0003700|GO:0006355 | |
Bma08g00963 | 379 | SUPERFAMILY | DNA-binding domain | 157 | 215 | IPR016177 | GO:0003677 | |
Bma08g00963 | 379 | SMART | rav1_2 | 158 | 220 | IPR001471 | GO:0003700|GO:0006355 | |
Bma08g00963 | 379 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 1 | 374 | - | - | |
Bma08g00963 | 379 | MobiDBLite | consensus disorder prediction | 127 | 159 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bma03g00323 | Bma08g00963 | CCT | |
Bma03g00323 | Bma08g00963 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma08g00963 | Bma-Chr8:48627500 | Bma03g01107 | Bma-Chr3:14349161 | 1.63E-11 | dispersed | |
Bma03g00323 | Bma-Chr3:2429169 | Bma08g00963 | Bma-Chr8:48627500 | 2.15E-118 | wgd | |
Bma07g00126 | Bma-Chr7:1983908 | Bma08g00963 | Bma-Chr8:48627500 | 7.59E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57785 | PF00847 | AP2 | 2.00E-10 | CL0081 | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g00963 | K09284 | - | qsu:112017577 | 268.855 |