Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00963 ATGTTGGATCTGAACTTTTATGTTACCCGTAGTGATTCAATGGAGGACCTCCACGATTTCCCTGCTAATTTTGCTGCCCAACTGGAAGATTCTGGCACTTCCAATTCCTCCATTGTTAATGCGGAAGAAGCTGCAGCTCCAAGCTATAATGGAAAAGATGAAGATTCTCTTAACACCGCCACTGGATTCATTTTCGACATCATGAGGGGAAAGAAAGAAAGCGAAGGCGCGAGTTGGGTAGTGGATGAAAACGCATCGTCGAAACTTGTAACGCAGCCTCTTTTTTCGGTCGCCGGAAACGGGAGAGACTGGGATTCGGAGCTTCGTTTGGGGTTATCCACCTTAGCGAGATCTCCGTGGCTAAACTTGTCGTTCTCCAACTCCAGTAGCGGAGTACAGGAGGTGAAAAGTCCTCGGCAAAAGCAACAGGTAGTGAGGAAAAGCCGGCGAGGTCCACGCTCCCGGAGCTCTCAGTACCGTGGCGTCACTTTTTACCGGCGAACCGGCCGCTGGGAATCACATATCTGGGACTGTGGGAAGCAAGTGTATTTAGGTGGATTTGACACTTCTCATGCGGCAGCAAGAGCATATGATAGAGCTGCAATTAAATTCAGAGGAACAGATGCTGATATTAATTTCAACACCAGCGATTATGAAGAAGATATAGAACAGACGAAGAACTTGACGAAGGAGGAATTCGTGTACGTTCTTCGTCGCCATAGCAGCAGATTCTCTCGAGGAAGCTCGAACATTCAAGCCTCTACGCTTCGAAAACATGGGCAATGGGAGAATGACGACGATCTTGATCTGAGTCTTGGGATTTCGAAAAATTCAGAAGTTTTAATCGGAAACGGGAGAATGGGATTCATGGATTGCCATTTTAATGGCGGTGACAAGTTCAGCGCAGAGAGAACACAGGACCATTGTTCCCTGATGGACGGCTCTGATACGTCACGTGTGGATGGACCTAGGCGACAGCCTCAGACTGCTGCAATGGTTGCACACCAGCCTTTCATTTTTGGCAGCTTCCAAGGTTTACACCAGTTTTCGTCGTCTTCTTCTTCTTCTTCCCCTGTGCCGATATTCACCATTGCAGCAGCATCATCAGGATTCTCTTCCTTCACCACCCACCGTCTCTAA 1140 48.07 MLDLNFYVTRSDSMEDLHDFPANFAAQLEDSGTSNSSIVNAEEAAAPSYNGKDEDSLNTATGFIFDIMRGKKESEGASWVVDENASSKLVTQPLFSVAGNGRDWDSELRLGLSTLARSPWLNLSFSNSSSGVQEVKSPRQKQQVVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTSHAAARAYDRAAIKFRGTDADINFNTSDYEEDIEQTKNLTKEEFVYVLRRHSSRFSRGSSNIQASTLRKHGQWENDDDLDLSLGISKNSEVLIGNGRMGFMDCHFNGGDKFSAERTQDHCSLMDGSDTSRVDGPRRQPQTAAMVAHQPFIFGSFQGLHQFSSSSSSSSPVPIFTIAAASSGFSSFTTHRL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48627500 48629034 - Bma028394.1 Bma08g00963 87790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00963 379 Pfam AP2 domain 158 206 IPR001471 GO:0003700|GO:0006355
Bma08g00963 379 Gene3D AP2/ERF domain 157 216 IPR036955 GO:0003700|GO:0006355
Bma08g00963 379 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 1 374 - -
Bma08g00963 379 CDD AP2 158 216 IPR001471 GO:0003700|GO:0006355
Bma08g00963 379 ProSiteProfiles AP2/ERF domain profile. 158 214 IPR001471 GO:0003700|GO:0006355
Bma08g00963 379 SUPERFAMILY DNA-binding domain 157 215 IPR016177 GO:0003677
Bma08g00963 379 SMART rav1_2 158 220 IPR001471 GO:0003700|GO:0006355
Bma08g00963 379 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 374 - -
Bma08g00963 379 MobiDBLite consensus disorder prediction 127 159 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00323 Bma08g00963 CCT
Bma03g00323 Bma08g00963 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00963 Bma-Chr8:48627500 Bma03g01107 Bma-Chr3:14349161 1.63E-11 dispersed
Bma03g00323 Bma-Chr3:2429169 Bma08g00963 Bma-Chr8:48627500 2.15E-118 wgd
Bma07g00126 Bma-Chr7:1983908 Bma08g00963 Bma-Chr8:48627500 7.59E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57785 PF00847 AP2 2.00E-10 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00963 K09284 - qsu:112017577 268.855