Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00966 ATGGTATCAGATACCTTGATGAAGATCGTATCGCCCTGCTGGAGACCTTCTGTTGAGGGTGAAAATTCTAGTAGAGGTGGAGACTCAAACCGCGGGAGGGTTGATGGGTTACTGTGGTATAAAGATTTTGGACGACACATGAATGGGGAATTCTCCATGGCAGTAATTCAAGCTAACAACTTACTGGAAGATCATAGCCAACTTGAATCAGGGCCAGTGAGCCTCTCGGAATCAGGTCCTCTAGGAACATTTGTTGGTATTTATGATGGCCACGGAGGACCAGAAGCTGCGCAGTTCGTAAATGATCATCTTTTTAACTATATCAGGACTATTCATGGTGCAGAACTAACATCAGAAAATCGAGGATTATCTGCTGAGGTTATTAAGAAGGCATTCTTGGCTACTGAGGAAGAATTCTTATCTCTTGTGAAGAAGCAATGGGCCGACAAACCACAGATTGCTTCTGTGGGCTCATGTTGTTTGGTGGGTATAATATGTGGTGGGTTTCTATATATTGCAAATGCAGGAGATTCTCGGGTGGTGTTAGGAAGACTCGAGAAAACTGTTCAAGAAGTTAAAGCCATTCAATTATCAACAGAGCACAATGCTAGCATGGAATCTGTGAGAGAGGAGTTACGCTCTACGCATCCCGATGATCCACAGATTGTGGTTTTGAAGCACAAGGTTTGGCGTGTGAAGGGTTTAATACAGGTTTCTAGATCTATTGGTGACGCCTATTTGAAGAAGGCGGAGTTCAATCGAGAGCCTTTATTGTCTAAGTTTAGATTGCCCCAGCCATTCGAGAAGCCGATTCTTAAAGCTGAGCCCACAATTTCTGTTGAGAAGCTTTATTCCGAAGATCAGTTTTTAATCTTTGCATCAGATGGCTTGTGGGAGTATCTAACCAATCAAGAGGCCGTTGATATTGTGCAGAGCTGCCCCCGTAATGGAATTGCAAGAAAACTAGTGAAAGCAGCACTGTGTGAAGCAGCAAAGAAGAGAGAAATGAGATACTCAGATTTGAAGAAGATAGATAGAGGAGTGAGAAGACATTTTCATGATGATATAACAGTCATCGTGGTGTTCCTTGATTCCCACCTCATCAGCAGGAGCTCATGGCGTGGCCCTCTGCTTTCAATCAGATGGGGAAGTGGAGTTTCTGTCGAATCTTAG 1173 43.65 MVSDTLMKIVSPCWRPSVEGENSSRGGDSNRGRVDGLLWYKDFGRHMNGEFSMAVIQANNLLEDHSQLESGPVSLSESGPLGTFVGIYDGHGGPEAAQFVNDHLFNYIRTIHGAELTSENRGLSAEVIKKAFLATEEEFLSLVKKQWADKPQIASVGSCCLVGIICGGFLYIANAGDSRVVLGRLEKTVQEVKAIQLSTEHNASMESVREELRSTHPDDPQIVVLKHKVWRVKGLIQVSRSIGDAYLKKAEFNREPLLSKFRLPQPFEKPILKAEPTISVEKLYSEDQFLIFASDGLWEYLTNQEAVDIVQSCPRNGIARKLVKAALCEAAKKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLISRSSWRGPLLSIRWGSGVSVES 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48642062 48644511 - Bma028397.2 Bma08g00966 87793
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00966 390 Gene3D - 41 372 IPR036457 -
Bma08g00966 390 SUPERFAMILY PP2C-like 74 364 IPR036457 -
Bma08g00966 390 CDD PP2Cc 51 363 IPR001932 -
Bma08g00966 390 SMART PP2C_4 44 361 IPR001932 -
Bma08g00966 390 PANTHER ALPHABET, ISOFORM E-RELATED 8 385 - -
Bma08g00966 390 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 385 - -
Bma08g00966 390 Pfam Protein phosphatase 2C 82 330 IPR001932 -
Bma08g00966 390 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169
Bma08g00966 390 ProSiteProfiles PPM-type phosphatase domain profile. 50 363 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g01653 Bma-Chr4:52389748 Bma08g00966 Bma-Chr8:48642062 6.47E-173 dispersed
Bma05g00995 Bma-Chr5:48448068 Bma08g00966 Bma-Chr8:48642062 2.11E-138 dispersed
Bma08g00745 Bma-Chr8:43881409 Bma08g00966 Bma-Chr8:48642062 1.42E-163 dispersed
Bma08g00966 Bma-Chr8:48642062 Bma03g00616 Bma-Chr3:5088697 8.56E-180 transposed
Bma08g00966 Bma-Chr8:48642062 Bma12g00917 Bma-Chr12:40612620 5.79E-180 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00966 K01102 - qsu:112015813 654.44