Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g00989 ATGGAGGCGTTGGTGAGAGTGTTTAATGAAGGACGGCCATTTCTGGCTGTCATTTTTTTGCAGTTTGGATACGCAGGAATGGCCATTATTACTAAGTTTGCTCTAAACAAAGGAATGAGTCAGCATGTTTTGGTAGTTTATCGTCATGCTGTTGCCACCATTGTCTTTGCTCCTATCGCGTTTTTCCTTGAAAGGAAAGTGAGGCCAAAGATGAACTTTTCCATCCTTTGGAAGATCATGTTGATGGGTTTGTTAGAGCCAGTGATCGATCAGAATTTGTACTACACTGGCATGAAGTATACAACTGCAACCTTCACATCTGCCATGACCAATGTTCTTCCTGCTTTTTCATTCTTACTGGCTTGGCTGTTAAGCTTGGAGAAGGTTGATATAAGGAGCCTTCCCGGCCAGGCCAAGATAGTGGGAACTATGGTGACAGTAGGAGGAGCAATGCTCATGACTTTGATCAGAGGACCAAATTTGAATCTCCCATGGACAAACCAAGATCAGAATTACCATAACGACTCTTCCAGCGCCAACAAGCAAGATCCTCTTAAAGGAGCTCTAATGATCTCAGCTGGCTGTGTTAGCTGGTCTGCATTTATGATTCTCCAAGCGATTACACTAAAATATTATCCGGTTGAGCTTTCGTTAACAGCCTGGATCTGCTTTGTGGGTATGGTGGAAGGAACTTTCCTGGCTATGGCGTTGGAATGGAAGAATTCTGCAGCTTGGTCGATCCATTTAGATGCTAAACTTTGTACTGCTCTTTACAGCGGGATAATGTGTTCTGGGATTGCTTATTATGTTCAAGGAGTCGTAATGAAGAAAAGAGGGCCTGTTTTTGTGACTGCATTCAGCCCTCTTTCCATGGTTATTGTTGCAGTATTGGGGTCCTTCTTTTTGTCTGAGATCATGTACTTAGGAAGGGTGATTGGAGCCACTGTGATTGTGTTTGGATTGTACCTGGTATTGTGGGGAAAGAGTAAGGATCAGATTCTATCAAATACAGCAACTGGAAAGACAGCACCAACAGATCAAGAAATGGGGGGTATAAATGAGACACAGTAA 1071 43.14 MEALVRVFNEGRPFLAVIFLQFGYAGMAIITKFALNKGMSQHVLVVYRHAVATIVFAPIAFFLERKVRPKMNFSILWKIMLMGLLEPVIDQNLYYTGMKYTTATFTSAMTNVLPAFSFLLAWLLSLEKVDIRSLPGQAKIVGTMVTVGGAMLMTLIRGPNLNLPWTNQDQNYHNDSSSANKQDPLKGALMISAGCVSWSAFMILQAITLKYYPVELSLTAWICFVGMVEGTFLAMALEWKNSAAWSIHLDAKLCTALYSGIMCSGIAYYVQGVVMKKRGPVFVTAFSPLSMVIVAVLGSFFLSEIMYLGRVIGATVIVFGLYLVLWGKSKDQILSNTATGKTAPTDQEMGGINETQ 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 48983945 48986243 - Bma028427.1 Bma08g00989 87816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g00989 356 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Bma08g00989 356 Pfam EamA-like transporter family 15 153 IPR000620 GO:0016020|GO:0016021
Bma08g00989 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 154 - -
Bma08g00989 356 PANTHER WAT1-RELATED PROTEIN 9 337 - -
Bma08g00989 356 SUPERFAMILY Multidrug resistance efflux transporter EmrE 249 330 - -
Bma08g00989 356 PANTHER WAT1-RELATED PROTEIN 9 337 IPR030184 GO:0016021|GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g02646 Bma-Chr1:83962891 Bma08g00989 Bma-Chr8:48983945 2.15E-114 dispersed
Bma04g01450 Bma-Chr4:49702076 Bma08g00989 Bma-Chr8:48983945 1.67E-117 dispersed
Bma14g00790 Bma-Chr14:8884259 Bma08g00989 Bma-Chr8:48983945 4.35E-48 dispersed
Bma14g00821 Bma-Chr14:9136598 Bma08g00989 Bma-Chr8:48983945 1.47E-48 dispersed
Bma14g01518 Bma-Chr14:30682173 Bma08g00989 Bma-Chr8:48983945 4.83E-50 dispersed
Bma01g01889 Bma-Chr1:69604153 Bma08g00989 Bma-Chr8:48983945 1.20E-144 transposed
Bma04g00745 Bma-Chr4:7999605 Bma08g00989 Bma-Chr8:48983945 2.29E-89 transposed
Bma04g01708 Bma-Chr4:53288668 Bma08g00989 Bma-Chr8:48983945 1.31E-71 transposed
Bma12g00355 Bma-Chr12:6040317 Bma08g00989 Bma-Chr8:48983945 3.89E-30 transposed
Bma03g00300 Bma-Chr3:2240766 Bma08g00989 Bma-Chr8:48983945 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g00989 - - qsu:112016472 473.396