Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01001 ATGGCAGCCATATTTACAGTGTTCATTCTAAGTGGTGTTGTTCAAACGCTTGTTGACGGCAGAATTCCCGGTGTTTACAGCGGAGGAGGTTGGCAGAGCGCCCACGCTACTTTTTACGGCGGAAGCGACGCCTCGGGAACAATGGGAGGGGCGTGTGGGTATGGAAACTTGTATAGCCAAGGCTACGGCAGTAACACGGCGGCGCTAAGCACAGCGCTCTTCAACAACGGTATGAGCTGTGGCGCTTGCTTCGAGATCAAGTGCGCGAACGACCCGAAATGGTGCCACTCAGGCAGCCCGTCGATCTTGATCACAGCCACCAATTTCTGCCCTCCAAACTACGCTCTTCCCAGCGATAATGGCGGCTGGTGCAACCCTCCTCGCCCACACTTCGACCTCGCTATGCCCATGTTCCTCAAAATAGCCGAATACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGAGTGTCATGCCGTAAGCAAGGAGGTATCAGGTTTACGATCAACGGGTTCAAATACTTCAATTTAGTTCTAATCACCAACGTCGCCGGCGCCGGAGATGTCGTGAAAGCGAGCGTCAAGGGGTCCAGAACTGGGTGGATGGTCTTGAGTCGGAATTGGGGCCAAAACTGGCAGTCGAACGCTGTTTTGGTTGGTCAGTCACTGTCATTCAGAGTCACAGGCAGCGACCGCCGCACCTCCACTTCTTGGAACATAGCCCCCTCGAACTGGCAGTTCGGCCAAACCTTCACCGGAAAAAATTTCCGGGTC 771 54.99 MAAIFTVFILSGVVQTLVDGRIPGVYSGGGWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGSNTAALSTALFNNGMSCGACFEIKCANDPKWCHSGSPSILITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVSCRKQGGIRFTINGFKYFNLVLITNVAGAGDVVKASVKGSRTGWMVLSRNWGQNWQSNAVLVGQSLSFRVTGSDRRTSTSWNIAPSNWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49073113 49074092 - Bma031473 Bma08g01001 87828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01001 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Bma08g01001 257 Gene3D - 163 255 IPR036749 -
Bma08g01001 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Bma08g01001 257 SMART dpbb_1 66 153 IPR007112 -
Bma08g01001 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Bma08g01001 257 PANTHER EXPANSIN-A4 8 256 - -
Bma08g01001 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Bma08g01001 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Bma08g01001 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Bma08g01001 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Bma08g01001 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Bma08g01001 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Bma08g01001 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Bma08g01001 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Bma08g01001 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Bma08g01001 257 PANTHER EXPANSIN-A15 8 256 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Bma08g01001 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Bma08g01001 257 Gene3D - 19 159 IPR036908 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g01113 Bma08g01001 CCT
Bma08g01113 Bma08g01001 ECH
Bma08g01001 Bma08g01113 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01001 Bma-Chr8:49073113 Bma15g00149 Bma-Chr15:1543263 4.06E-126 dispersed
Bma12g00124 Bma-Chr12:1846061 Bma08g01001 Bma-Chr8:49073113 2.28E-90 dispersed
Bma13g00283 Bma-Chr13:4775413 Bma08g01001 Bma-Chr8:49073113 1.06E-89 dispersed
Bma12g00112 Bma-Chr12:1746745 Bma08g01001 Bma-Chr8:49073113 4.19E-89 transposed
Bma01g01865 Bma-Chr1:68418003 Bma08g01001 Bma-Chr8:49073113 1.52E-157 wgd
Bma11g00114 Bma-Chr11:1110498 Bma08g01001 Bma-Chr8:49073113 1.23E-165 wgd
Bma04g00671 Bma-Chr4:6450942 Bma08g01001 Bma-Chr8:49073113 3.49E-162 wgd
Bma07g00098 Bma-Chr7:1745475 Bma08g01001 Bma-Chr8:49073113 1.16E-163 wgd
Bma08g01001 Bma-Chr8:49073113 Bma08g01113 Bma-Chr8:50094989 6.95E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01001 - - rcu:8261656 495.352