Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01024 ATGGCTTCCATTTCTTCCAGCCCGCGATCTGTTGAAGACATTTTTAAGGATTACTGCGCTCGGCATTCCGGTCTTGTACGCGCTCTAACCTATGATGTAGATGAGTTCTACTCGCTCTGTGATCCAGACAAGGAGAATTTGTGTTTGTATGGACACCCAAACGAGTCATGGGAGGTAACTCTTCCCGCTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCGTTGGGCATTAATTTTGCAAGAGATGGGATGAAGAGGAAGGATTGGCTTTCACTAGTGGCTGTGCACAGCGATTGTTGGTTGCTCTCGGTTGCTTTCTATTTTGGTGCTCGATTAAACCGTAATGAAAGGAAGCGCCTGTTTAGCCTGATAAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTGTAAAAGAAAAGCTTAGCATGGATAGTGGAAGCAAATCTAAGAACGCCATCAAGAGATCAATCGATGGACAGGCAAGAAGCAGCAATTCTAAGCTAATCGAGGAAAGTTACGGAGAAGACGAAGACGAGCACAGTGACACTCTTTGTGGAAGCTGCGGTGGTAATTACAGCGGGGACGAGTTTTGGATCGGGTGTGACATCTGCGAGAGGTGGTTTCACGGAAAATGCGTGAAGATAACACCAGCCAAGGCAGAAAGTATTAAACAGTACAAATGTCCATCTTGCAGCACAAAGAAGGGCCGGCCT 723 46.89 MASISSSPRSVEDIFKDYCARHSGLVRALTYDVDEFYSLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMKRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTVFEVVTGRKPVKEKLSMDSGSKSKNAIKRSIDGQARSSNSKLIEESYGEDEDEHSDTLCGSCGGNYSGDEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49360028 49366888 + Bma031477 Bma08g01024 87851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01024 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Bma08g01024 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Bma08g01024 241 MobiDBLite consensus disorder prediction 143 183 - -
Bma08g01024 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Bma08g01024 241 SMART PHD_3 187 235 IPR001965 -
Bma08g01024 241 Pfam PHD-finger 188 236 IPR019787 -
Bma08g01024 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 185 236 IPR013083 -
Bma08g01024 241 CDD PHD_AL_plant 187 237 IPR044104 -
Bma08g01024 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Bma08g01024 241 MobiDBLite consensus disorder prediction 149 171 - -
Bma08g01024 241 Pfam Alfin 10 136 IPR021998 GO:0006355|GO:0042393
Bma08g01024 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01743 Bma-Chr1:55957108 Bma08g01024 Bma-Chr8:49360028 5.07E-132 dispersed
Bma02g00545 Bma-Chr2:11058348 Bma08g01024 Bma-Chr8:49360028 6.73E-97 dispersed
Bma06g00890 Bma-Chr6:43804599 Bma08g01024 Bma-Chr8:49360028 1.15E-96 dispersed
Bma08g01024 Bma-Chr8:49360028 Bma12g00038 Bma-Chr12:934886 1.65E-69 dispersed
Bma03g00247 Bma-Chr3:1912905 Bma08g01024 Bma-Chr8:49360028 5.90E-27 wgd
Bma04g00716 Bma-Chr4:7308242 Bma08g01024 Bma-Chr8:49360028 2.49E-104 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57790 PF12165 Alfin 7.30E-68 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01024 - - csv:101211934 448.358