Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g01024 | ATGGCTTCCATTTCTTCCAGCCCGCGATCTGTTGAAGACATTTTTAAGGATTACTGCGCTCGGCATTCCGGTCTTGTACGCGCTCTAACCTATGATGTAGATGAGTTCTACTCGCTCTGTGATCCAGACAAGGAGAATTTGTGTTTGTATGGACACCCAAACGAGTCATGGGAGGTAACTCTTCCCGCTGAGGAAGTTCCTCCTGAGCTTCCTGAACCAGCGTTGGGCATTAATTTTGCAAGAGATGGGATGAAGAGGAAGGATTGGCTTTCACTAGTGGCTGTGCACAGCGATTGTTGGTTGCTCTCGGTTGCTTTCTATTTTGGTGCTCGATTAAACCGTAATGAAAGGAAGCGCCTGTTTAGCCTGATAAACGACCTGCCTACTGTTTTTGAAGTTGTAACTGGAAGGAAGCCTGTAAAAGAAAAGCTTAGCATGGATAGTGGAAGCAAATCTAAGAACGCCATCAAGAGATCAATCGATGGACAGGCAAGAAGCAGCAATTCTAAGCTAATCGAGGAAAGTTACGGAGAAGACGAAGACGAGCACAGTGACACTCTTTGTGGAAGCTGCGGTGGTAATTACAGCGGGGACGAGTTTTGGATCGGGTGTGACATCTGCGAGAGGTGGTTTCACGGAAAATGCGTGAAGATAACACCAGCCAAGGCAGAAAGTATTAAACAGTACAAATGTCCATCTTGCAGCACAAAGAAGGGCCGGCCT | 723 | 46.89 | MASISSSPRSVEDIFKDYCARHSGLVRALTYDVDEFYSLCDPDKENLCLYGHPNESWEVTLPAEEVPPELPEPALGINFARDGMKRKDWLSLVAVHSDCWLLSVAFYFGARLNRNERKRLFSLINDLPTVFEVVTGRKPVKEKLSMDSGSKSKNAIKRSIDGQARSSNSKLIEESYGEDEDEHSDTLCGSCGGNYSGDEFWIGCDICERWFHGKCVKITPAKAESIKQYKCPSCSTKKGRP | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 49360028 | 49366888 | + | Bma031477 | Bma08g01024 | 87851 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g01024 | 241 | PANTHER | PHD FINGER PROTEIN ALFIN-LIKE 2 | 1 | 240 | - | - | |
Bma08g01024 | 241 | ProSiteProfiles | Zinc finger PHD-type profile. | 185 | 237 | IPR019787 | - | |
Bma08g01024 | 241 | MobiDBLite | consensus disorder prediction | 143 | 183 | - | - | |
Bma08g01024 | 241 | ProSitePatterns | Zinc finger PHD-type signature. | 188 | 234 | IPR019786 | - | |
Bma08g01024 | 241 | SMART | PHD_3 | 187 | 235 | IPR001965 | - | |
Bma08g01024 | 241 | Pfam | PHD-finger | 188 | 236 | IPR019787 | - | |
Bma08g01024 | 241 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 185 | 236 | IPR013083 | - | |
Bma08g01024 | 241 | CDD | PHD_AL_plant | 187 | 237 | IPR044104 | - | |
Bma08g01024 | 241 | SUPERFAMILY | FYVE/PHD zinc finger | 176 | 239 | IPR011011 | - | |
Bma08g01024 | 241 | MobiDBLite | consensus disorder prediction | 149 | 171 | - | - | |
Bma08g01024 | 241 | Pfam | Alfin | 10 | 136 | IPR021998 | GO:0006355|GO:0042393 | |
Bma08g01024 | 241 | PANTHER | CPG BINDING PROTEIN | 1 | 240 | IPR045104 | GO:0006355|GO:0042393 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01743 | Bma-Chr1:55957108 | Bma08g01024 | Bma-Chr8:49360028 | 5.07E-132 | dispersed | |
Bma02g00545 | Bma-Chr2:11058348 | Bma08g01024 | Bma-Chr8:49360028 | 6.73E-97 | dispersed | |
Bma06g00890 | Bma-Chr6:43804599 | Bma08g01024 | Bma-Chr8:49360028 | 1.15E-96 | dispersed | |
Bma08g01024 | Bma-Chr8:49360028 | Bma12g00038 | Bma-Chr12:934886 | 1.65E-69 | dispersed | |
Bma03g00247 | Bma-Chr3:1912905 | Bma08g01024 | Bma-Chr8:49360028 | 5.90E-27 | wgd | |
Bma04g00716 | Bma-Chr4:7308242 | Bma08g01024 | Bma-Chr8:49360028 | 2.49E-104 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57790 | PF12165 | Alfin | 7.30E-68 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g01024 | - | - | csv:101211934 | 448.358 |