Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bma08g01029 | ATGGGTGGGAATTCTCCATGCGCGTCCTGTAAGCTTTTGAGAAGACGATGCGCAAAGGAATGTATCTTCGCCCCTTATTTTCCATCAGACGACCCTCATAAGTTCGCCATGGTTCACAAGGTTTTTGGAGCTAGCAATATCAGCAAAATGTTGCAGGAGCTTCCAGTTCATCAGAGAGCAGATGCTGTGAGCAGTCTAGTTTATGAAGCAAATGCAAGAGTGAGAGACCCAGTCTATGGGTGCGTAGGAGCTATATCTTACCTCCAAACCCAGGTTTCTCAGCTTCAAATGGAACTTGCAGTGGTTCAAGCTGAGATTCTATGCATCCAAATGCAGCAAGAGCCAATGGCTGCTTTGCCAAGTAGCTCCCCATTATACCCAGATGAGAAGTCTTATAGCTTTGTCCAAAACAATCTCCCTCACTCCCTTAATTTTGGCTCTTCTAATACTGTAATTCTCGACTCTCTCAAAAGGGAGACCCTTTTCAGCCACGACATGGTTTCT | 504 | 45.44 | MGGNSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAMVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMELAVVQAEILCIQMQQEPMAALPSSSPLYPDEKSYSFVQNNLPHSLNFGSSNTVILDSLKRETLFSHDMVS | 168 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 49439546 | 49440138 | + | Bma031478 | Bma08g01029 | 87856 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bma08g01029 | 168 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 12-LIKE | 2 | 127 | - | - | |
Bma08g01029 | 168 | Pfam | Lateral organ boundaries (LOB) domain | 6 | 103 | IPR004883 | - | |
Bma08g01029 | 168 | ProSiteProfiles | LOB domain profile. | 5 | 106 | IPR004883 | - | |
Bma08g01029 | 168 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 2 | 127 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bma01g01587 | Bma-Chr1:40187920 | Bma08g01029 | Bma-Chr8:49439546 | 2.58E-58 | dispersed | |
Bma03g00208 | Bma-Chr3:1569533 | Bma08g01029 | Bma-Chr8:49439546 | 2.13E-47 | dispersed | |
Bma08g00949 | Bma-Chr8:48484112 | Bma08g01029 | Bma-Chr8:49439546 | 9.73E-52 | dispersed | |
Bma08g01029 | Bma-Chr8:49439546 | Bma14g00879 | Bma-Chr14:9901680 | 1.20E-60 | dispersed | |
Bma13g00842 | Bma-Chr13:35608186 | Bma08g01029 | Bma-Chr8:49439546 | 2.42E-48 | dispersed | |
Bma14g01508 | Bma-Chr14:30351599 | Bma08g01029 | Bma-Chr8:49439546 | 8.70E-47 | dispersed | |
Bma09g00533 | Bma-Chr9:42100715 | Bma08g01029 | Bma-Chr8:49439546 | 1.71E-23 | transposed | |
Bma14g02066 | Bma-Chr14:44027832 | Bma08g01029 | Bma-Chr8:49439546 | 1.51E-38 | transposed | |
Bma03g00230 | Bma-Chr3:1749341 | Bma08g01029 | Bma-Chr8:49439546 | 4.58E-110 | wgd | |
Bma07g01581 | Bma-Chr7:51123892 | Bma08g01029 | Bma-Chr8:49439546 | 3.28E-27 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
57791 | PF03195 | LOB | 1.10E-42 | No_clan | Bma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bma08g01029 | - | - | cit:102614863 | 270.396 |