Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01029 ATGGGTGGGAATTCTCCATGCGCGTCCTGTAAGCTTTTGAGAAGACGATGCGCAAAGGAATGTATCTTCGCCCCTTATTTTCCATCAGACGACCCTCATAAGTTCGCCATGGTTCACAAGGTTTTTGGAGCTAGCAATATCAGCAAAATGTTGCAGGAGCTTCCAGTTCATCAGAGAGCAGATGCTGTGAGCAGTCTAGTTTATGAAGCAAATGCAAGAGTGAGAGACCCAGTCTATGGGTGCGTAGGAGCTATATCTTACCTCCAAACCCAGGTTTCTCAGCTTCAAATGGAACTTGCAGTGGTTCAAGCTGAGATTCTATGCATCCAAATGCAGCAAGAGCCAATGGCTGCTTTGCCAAGTAGCTCCCCATTATACCCAGATGAGAAGTCTTATAGCTTTGTCCAAAACAATCTCCCTCACTCCCTTAATTTTGGCTCTTCTAATACTGTAATTCTCGACTCTCTCAAAAGGGAGACCCTTTTCAGCCACGACATGGTTTCT 504 45.44 MGGNSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAMVHKVFGASNISKMLQELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMELAVVQAEILCIQMQQEPMAALPSSSPLYPDEKSYSFVQNNLPHSLNFGSSNTVILDSLKRETLFSHDMVS 168
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49439546 49440138 + Bma031478 Bma08g01029 87856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01029 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 127 - -
Bma08g01029 168 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Bma08g01029 168 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Bma08g01029 168 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01587 Bma-Chr1:40187920 Bma08g01029 Bma-Chr8:49439546 2.58E-58 dispersed
Bma03g00208 Bma-Chr3:1569533 Bma08g01029 Bma-Chr8:49439546 2.13E-47 dispersed
Bma08g00949 Bma-Chr8:48484112 Bma08g01029 Bma-Chr8:49439546 9.73E-52 dispersed
Bma08g01029 Bma-Chr8:49439546 Bma14g00879 Bma-Chr14:9901680 1.20E-60 dispersed
Bma13g00842 Bma-Chr13:35608186 Bma08g01029 Bma-Chr8:49439546 2.42E-48 dispersed
Bma14g01508 Bma-Chr14:30351599 Bma08g01029 Bma-Chr8:49439546 8.70E-47 dispersed
Bma09g00533 Bma-Chr9:42100715 Bma08g01029 Bma-Chr8:49439546 1.71E-23 transposed
Bma14g02066 Bma-Chr14:44027832 Bma08g01029 Bma-Chr8:49439546 1.51E-38 transposed
Bma03g00230 Bma-Chr3:1749341 Bma08g01029 Bma-Chr8:49439546 4.58E-110 wgd
Bma07g01581 Bma-Chr7:51123892 Bma08g01029 Bma-Chr8:49439546 3.28E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57791 PF03195 LOB 1.10E-42 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01029 - - cit:102614863 270.396