Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01035 ATGGCTATGGATATGAACCCAGTGGCCAAGCTTCGATTATTCCAGGAAAAAACAGCATTTTGGCCGACTTCGTATATTTCTGAGAAAGCGAGTGAGAAATGGAAGACTCAACCCAAATGTTGCTCCTTCTGGTTTCTTCTGCTGCTTCTTTATCTCATCCGACCAGTTTTAAGCCGGAATTGGGACGGCGTAGTAGTAACAGAAGCTGATTTCCAGTCACTTCAAGCATTCAAGCATGAATTAGTGGACCCAAAAGGTTTTCTCAAGAGCTGGAACGACAGCGGATTCGGCGCTTGCTCCGGCGGCTGGGCTGGAATAAAGTGCGCGCAGGGAGAAGTTATAGTGATCCAACTCCCATGGAAAGGGCTGGGTGGTCGAATCTCAGAAAAAATCGGCCAACTCGAAGCACTTCGGAAGCTTAGCCTCCACGACAATCTCATCGGCGGTCCAATTCCTTACTCTCTGGGATTCCTTCCGAATCTGAGAGGAGTTCAGCTGTTTAACAACCGACTTTCCGGTTCAGTTCCTCCTTCATTAGGCTCCTGCCCTTTGCTTCAGACTCTTGATCTGAGCAACAATTCTTTATATGGGTCTATTCCGTCGAGTCTCGCCAACTCTACCAAGCTTTACTGGCTTAATCTCAGTTTCAATTCGTTTTCGGGTCCTATCCCAAGTTCTCTGACAAACTCCGTCTCCCTCACTTTCCTTTCTCTCGACCACAACAATCTTTCAGGGCCCATTCCTGAATCTTGGGGACCCACCCAGAGTAAAAATAGGCTCTTTCGTCTTCAATCCATTATCCTGGATAATAACCTTCTCTCAGGAAGCATACCTGCCTCTCTCGGGAATCTCAGTGAGCTCCAAGTGATTTCTCTCAGCAATAATGAGTTGGAAGGAAACTTGCCGATGGAACTGGGGCAGCTTTCTAGTCTTAGAATTCTTGATGCTTCGAATAATGGCATCAATGGAAGATTGCCCGACAGTCTTTTCAATAATCTCTCTGTTCTTAATTTGAGTGGTAATCTGTTTAATGGCAGCATTCCTGCGACTCTGGGGAAGATTTCGTCGCTTACAGAGCTAGATTTGTCTCGAAATAATTTGAGTGGACAAATCCCAACTTCTCTCGCTGATCTACCGGCGCTTAATTTCTTGAATGTTTCTTACAACAACCTTTCTGGGTCTGTTCCGGCTGCTCTCTCGAAGAAATTCAACTCGAGTTCATTTGTCGGGAATGTCCAGCTATGTGGGTTCAGTGGTTCAGCTCCATGCTCTTCTGCCCTATCTCCTTCTCAGATTCTACCGACTCCATCTCCAGAAGGCCATCACCGGAAATTCAGCACCAAAGATGTCATACTCATTGCAGCAGGATCTCTCCTCATCGTCCTGGTTTTACTTTGTTGTATATTGTGTTGGTGCTTAATTAGGAAAAGGGCTGCATCAAAAGGGAAGGACGGTGGTCCAGCCGAGGGAGGAGGGGCTGCAAGAGCCGAAAAGGGTTTACCTCCCACAGCCGGAGAAGTTGAAGCCGGAGGGGATGTGGGCGGAAAGCTCGTCCATTTCGACGGGCCGATTATCTTCACTGCAGATGATCTTTTGTGTGCAACAGCAGAGATTATGGGAAAGAGCACTTACGGGACAGTCTATAAGGCCACGCTCGAGGATGGAAATCAAGTAGCAGTGAAGAGACTGAGGGAGAAGATAACTAAAGGCAGGAGGGAATTCGAAACGGAAGTCGATCTGCTCGGAAAAATCCGGCACCAGAATCTTCTGTCTTTAATGGCTTATTACTTGGGACCAAAGGGAGAAAAGCTTCTTGTTTTCGACTTCATGCCGAAGGGAAGTCTAGCAACCTTCCTCCATGCTCGAGGGACAGACTCGCCGGTTTACTGGCCGACGAGGATGAAAATAATGCAGGGGATGACTCGAGGATTGTTTTACCTCCACACCCACGAGAGCATTATACACGGCAATCTTACATCGAGTAATATTCTCCTCGACGAGCAGACCAACGCGAAGATCGCAGATTTTGGACTGTCAAGGTTAATGACAGCAGCCGCGAATTCGAACGTGATTGCAACGGCTGGAGCATTAGGCTACAGAGCTCCAGAGCTGTCTAAGCTGAAGAAAGCCAACACAAAAACAGACGTATACAGCCTAGGTGTTATAATGTTAGAACTCTTAACCGGAAAGTCCACCGGAGAGGCGACGAACGGAGTGGATTTGCCGCAGTGGGTGGCATCGATTGTTAAAGAGGAGTGGACGAATGAGGTGTTCGATCTAGAGTTGATGCGGGACGCGTCGGCCATTGGCGATGAGTTGCTAAATACATTGAAACTAGCTTTGCATTGTGTTGATCCTTCTCCTTCTGCAAGACCGGAAGTCCAGCAGATTCTGCATCAATTAGAAGAGATCAGACCAGAGACCACTCCTACTTCCGGAGATGATACGCCCGGCGCCATCACGTCCGGCCACTAA 2475 47.88 MAMDMNPVAKLRLFQEKTAFWPTSYISEKASEKWKTQPKCCSFWFLLLLLYLIRPVLSRNWDGVVVTEADFQSLQAFKHELVDPKGFLKSWNDSGFGACSGGWAGIKCAQGEVIVIQLPWKGLGGRISEKIGQLEALRKLSLHDNLIGGPIPYSLGFLPNLRGVQLFNNRLSGSVPPSLGSCPLLQTLDLSNNSLYGSIPSSLANSTKLYWLNLSFNSFSGPIPSSLTNSVSLTFLSLDHNNLSGPIPESWGPTQSKNRLFRLQSIILDNNLLSGSIPASLGNLSELQVISLSNNELEGNLPMELGQLSSLRILDASNNGINGRLPDSLFNNLSVLNLSGNLFNGSIPATLGKISSLTELDLSRNNLSGQIPTSLADLPALNFLNVSYNNLSGSVPAALSKKFNSSSFVGNVQLCGFSGSAPCSSALSPSQILPTPSPEGHHRKFSTKDVILIAAGSLLIVLVLLCCILCWCLIRKRAASKGKDGGPAEGGGAARAEKGLPPTAGEVEAGGDVGGKLVHFDGPIIFTADDLLCATAEIMGKSTYGTVYKATLEDGNQVAVKRLREKITKGRREFETEVDLLGKIRHQNLLSLMAYYLGPKGEKLLVFDFMPKGSLATFLHARGTDSPVYWPTRMKIMQGMTRGLFYLHTHESIIHGNLTSSNILLDEQTNAKIADFGLSRLMTAAANSNVIATAGALGYRAPELSKLKKANTKTDVYSLGVIMLELLTGKSTGEATNGVDLPQWVASIVKEEWTNEVFDLELMRDASAIGDELLNTLKLALHCVDPSPSARPEVQQILHQLEEIRPETTPTSGDDTPGAITSGH 824
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49494359 49496906 - Bma028470.1 Bma08g01035 87862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01035 824 Pfam Leucine rich repeat 332 391 IPR001611 GO:0005515
Bma08g01035 824 Pfam Leucine rich repeat 262 321 IPR001611 GO:0005515
Bma08g01035 824 MobiDBLite consensus disorder prediction 802 824 - -
Bma08g01035 824 SUPERFAMILY L domain-like 107 415 - -
Bma08g01035 824 Gene3D Transferase(Phosphotransferase) domain 1 611 816 - -
Bma08g01035 824 Gene3D Phosphorylase Kinase; domain 1 539 610 - -
Bma08g01035 824 Pfam Leucine rich repeat N-terminal domain 69 108 IPR013210 -
Bma08g01035 824 Pfam Protein tyrosine and serine/threonine kinase 536 801 IPR001245 GO:0004672|GO:0006468
Bma08g01035 824 SUPERFAMILY Protein kinase-like (PK-like) 537 806 IPR011009 -
Bma08g01035 824 Pfam Leucine Rich repeats (2 copies) 159 199 IPR025875 -
Bma08g01035 824 Gene3D Ribonuclease Inhibitor 64 256 IPR032675 -
Bma08g01035 824 MobiDBLite consensus disorder prediction 805 824 - -
Bma08g01035 824 PRINTS Leucine-rich repeat signature 354 367 - -
Bma08g01035 824 PRINTS Leucine-rich repeat signature 185 198 - -
Bma08g01035 824 Gene3D Ribonuclease Inhibitor 257 426 IPR032675 -
Bma08g01035 824 MobiDBLite consensus disorder prediction 480 505 - -
Bma08g01035 824 SMART LRR_typ_2 158 182 IPR003591 -
Bma08g01035 824 SMART LRR_typ_2 354 377 IPR003591 -
Bma08g01035 824 SMART LRR_typ_2 260 284 IPR003591 -
Bma08g01035 824 SMART LRR_typ_2 378 401 IPR003591 -
Bma08g01035 824 SMART LRR_typ_2 308 332 IPR003591 -
Bma08g01035 824 ProSiteProfiles Protein kinase domain profile. 533 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g01035 824 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 332 810 - -
Bma08g01035 824 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 24 331 - -
Bma08g01035 824 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 332 810 - -
Bma08g01035 824 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 24 331 - -
Bma08g01035 824 CDD STKc_IRAK 539 804 - -
Bma08g01035 824 ProSiteProfiles Leucine-rich repeat profile. 356 379 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01035 Bma-Chr8:49494359 Bma08g01137 Bma-Chr8:50320801 0 dispersed
Bma15g00237 Bma-Chr15:2369232 Bma08g01035 Bma-Chr8:49494359 8.58E-30 dispersed
Bma08g01035 Bma-Chr8:49494359 Bma06g01049 Bma-Chr6:47314103 4.46E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66677 PF07714 PK_Tyr_Ser-Thr 3.90E-41 CL0016 Bma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01035 - - csv:101214895 1140.56