Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01047 ATGTCCTCTGACGACATGAATGCCCTCAACTCGCAGCTGCTATTCCAAGACGAAACTTTGCGCTTTAATTGCGCCACCCCTCAGCGCCGAGTTGGGGAACCCGGTCCCAAAACTCGAGAGCTAAGCGGTTTCCTAGATGATAAGCTCTTCTCAGTTGATCGTGCTCGCTTCTTCACTCCCCAGGGACAGGATTTCCGACGGACGATGTATGGTGACGCCCCGGAGAGAACAGAGAGTCGAAATTGGAATGGAAATGGTAGTACTGCGGCGGCCAGCGGCAAATCCTCCGACGAGGACGATGATGAAGAGGAGGACGAAGATGACGAAGTCGACGATGATGGCGTAGGTGATGTGGAGGGACTTGTTGCTGATCCTATTGGTCGTAAGAGCAATTGTAATGTTAACATAGACGCAAACAATCAAAGTGGTGGGAGTGGACTAACCGGCGGAAAGGAAATCGGGAACGGAAAACCAAAGCAACACTCTCTTTTTGTAGAAATGCGATTGACCCAAGATGGACTGGGGAAGGATGGTGCGGTTTGCCAGTCAGGAAATCACGCCAGAGCAAGTCCGACTGAGAACAACCAGCTTGGAAGACTTGGGAACTACTCCAATGCAGTAACTATTGGAGAGTCCGAGAATGACATGTATTATTCACAGTTTCTGCAGGTAGCTGTATCATCTTCTTCTGGGCTGAAGGATTTGGGCGTGGAAAATGGCTCTGGGTTTAGTAGGAGAAAGGATTTCTCCTTTAATGGTGATGCTGGGGAGTCTTTGAGAGCAATCCTTTCAGACCCTGTGACGGATGCTCTTATGGACGATGCAATGATATTACCTTGTGGGCATTCATTTGGAAGTGGCGGTATACAACACGTGACTAGAATTAAAGCTTGCTACTCATGTTCTGTGTCCGTGTCAGAAGATTCATTTGCTCCAAATCTCGCTCTTCGAGATGCTGTCCAGGCCTTCCGCCGAGAAGAAGAGTTACAGCTGTATCGTTCACACAAGAGGAGAAGGGAGAGATTTGACCAGGATAAAAATGGTTATGGTGATATAACTCTCATGGACCAACCTAGGGGAAGAGGTGTGCAGTTTCCGTTTTCAGTGACTGACCGAGTTATTATAAAGGGAAACAAGCGAACACCACAGCGTTTCGTCGGTCGAGAGGCTGTCGTGACAACACAATGCTTGAATGGATGGTATGTAGTGAAGACACTGGACAACGCAGAGAGTGTGAAACTTCAGTATCGCTCGCTAGCCAGGGTCGGAGACGATCCGCCTTCAAGGACGACACATCCAAGCAAGATCTCGCCAAACTGGCTTTAG 1326 48.87 MSSDDMNALNSQLLFQDETLRFNCATPQRRVGEPGPKTRELSGFLDDKLFSVDRARFFTPQGQDFRRTMYGDAPERTESRNWNGNGSTAAASGKSSDEDDDEEEDEDDEVDDDGVGDVEGLVADPIGRKSNCNVNIDANNQSGGSGLTGGKEIGNGKPKQHSLFVEMRLTQDGLGKDGAVCQSGNHARASPTENNQLGRLGNYSNAVTIGESENDMYYSQFLQVAVSSSSGLKDLGVENGSGFSRRKDFSFNGDAGESLRAILSDPVTDALMDDAMILPCGHSFGSGGIQHVTRIKACYSCSVSVSEDSFAPNLALRDAVQAFRREEELQLYRSHKRRRERFDQDKNGYGDITLMDQPRGRGVQFPFSVTDRVIIKGNKRTPQRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLARVGDDPPSRTTHPSKISPNWL 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49599815 49605995 - Bma028484.1 Bma08g01047 87874

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01047 441 MobiDBLite consensus disorder prediction 96 118 - -
Bma08g01047 441 MobiDBLite consensus disorder prediction 78 93 - -
Bma08g01047 441 MobiDBLite consensus disorder prediction 73 157 - -
Bma08g01047 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 42 441 - -
Bma08g01047 441 MobiDBLite consensus disorder prediction 421 441 - -
Bma08g01047 441 ProSiteProfiles U-box domain profile. 258 330 IPR003613 GO:0004842|GO:0016567
Bma08g01047 441 MobiDBLite consensus disorder prediction 132 148 - -
Bma08g01047 441 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 42 441 - -
Bma08g01047 441 SUPERFAMILY RING/U-box 259 330 - -
Bma08g01047 441 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 330 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01047 - - - vvi:100262140 538.88
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma06g00882 . 9 736 Plant U-box Gene Family AT5G57035 51.3 6.7e-212 734.2
Bma06g00885 . 1 310 Plant U-box Gene Family AT5G57035 66.1 1.4e-116 417.5
Bma08g01047 . 206 441 Plant U-box Gene Family AT5G05230 56.7 2.3e-66 249.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g01047 Bma_Chr08 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0