Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01049 ATGGATCCCGACGCCTTCACGGCCAGTTTATTCAAGTGGGACCCTCGAGCTGCTGTTGGACCATCCAATCGCTTACTAGACCAGGTGGCTACTCCATCCGCCAGTGCTGTTGTTACCACGACGTTCTCAGTCCGACCGAGGGGTCTGGGTGGGCTGGAAGACTTGTTTCAGGCTTACGGTATCAGATACTACACCGCAACAAAGATAGCAGAGCTTGGATTCACCGTGAGTACTCTGTTGAACATGAAAGACGTAGAGCTGGACGATATGATGAACAGTCTCTCGCAGATATTCCGGTGGGACCTTTTGGTCGGAGAGAGGTACGGTATTAAAGCGGCTGTTAGAGCCGAGAGAAGACGACTGGAAGATGAAATGGATTCCCGGCGCCGCCACTTACTCTCCGCTGATACTGCTAATAACGCTTTTGATGCTCTCTCTCAGGAAGGTCGATTATCGGAGGAGCCTGTGCATCAGGAAAAGGAGGTGATCCGAAGCGGCGGAGGACCAAGGGAGTTGATTGCAGCTTCAGAGAAGAAGAGCCGGCGACGTCTGAAGGGGCAAAGAAAACTGCTAGTTGATTTGGATAACGACGGAAACGATGTAGGAGAAGAAGACGACGACGACATTAATGGTGGAAATGAAAGACAACGAGAACACCCGTTCATCGTGACAGAACCAGGAGAAGTTGCGAGAGGGAAGAAGAATGGCCTCGATTACCTCTTCCACCTTTACGAACAGTGCCGTGAATTTCTGATCCAGGTGCAGAATATAGCCAAGGACCGCGGCGAGAAATGCCCCACCAAGGTGACGAACCAGGTGTTTAGATACGCGAAGAAGGCCGGAGCGAGCTACATCAACAAGCCCAAAATGCGGCACTACGTCCACTGCTACGCGCTGCATTGCCTGGACGAGGAGGCATCGAATGCACTAAGAAGGGCGTTCAAAGAGAGTGGGGAGAACGTCGGAGCTTGGCGAGAAGCCTGCTACAAACCTCTGGTGCGCGTCGCCGCCCGGCAAGGGTGGGACATAGATGCGATATTTAACTCCCATCCTCGTTTGGCTATTTGGTACGTCCCCACCAAACTCCGGCAGCTTTGTCACTCTGACCGCAATAGCGTTGCAGCTTCGAGCTGTGTCTCCAATGGCCACGATTTCATTCCCTTCTGA 1167 52.7 MDPDAFTASLFKWDPRAAVGPSNRLLDQVATPSASAVVTTTFSVRPRGLGGLEDLFQAYGIRYYTATKIAELGFTVSTLLNMKDVELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLEDEMDSRRRHLLSADTANNAFDALSQEGRLSEEPVHQEKEVIRSGGGPRELIAASEKKSRRRLKGQRKLLVDLDNDGNDVGEEDDDDINGGNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKESGENVGAWREACYKPLVRVAARQGWDIDAIFNSHPRLAIWYVPTKLRQLCHSDRNSVAASSCVSNGHDFIPF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49611494 49612804 + Bma028486.1 Bma08g01049 87876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01049 388 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 210 374 IPR035209 GO:0003677
Bma08g01049 388 MobiDBLite consensus disorder prediction 148 169 - -
Bma08g01049 388 MobiDBLite consensus disorder prediction 150 166 - -
Bma08g01049 388 PANTHER PROTEIN LEAFY 1 384 IPR002910 GO:0003677|GO:0006355
Bma08g01049 388 MobiDBLite consensus disorder prediction 194 214 - -
Bma08g01049 388 Pfam Floricaula / Leafy protein SAM domain 49 125 IPR035079 -
Bma08g01049 388 Gene3D Protein LEAFY 211 380 IPR038276 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01049 - - - vvi:100252653 582.793
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bma08g01049 . 1 376 Orphan Transcription Factor Family AT5G61850 59.3 4.1e-123 438.3
Bma06g01437 . 1 161 Orphan Transcription Factor Family AT1G06040 62.9 7.5e-55 210.3
Bma10g00461 BCT 1 106 Orphan Transcription Factor Family AT1G06040 66.0 2.4e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57792 PF17538 C_LFY_FLO 5.50E-108 CL0123 Bma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bma08g01049 Bma_Chr08 FPKM 10.859438 14.965807 12.594026 14.400505 22.865955 16.495684 19.573311 17.397291 18.830856 18.646978