Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01049 ATGGATCCCGACGCCTTCACGGCCAGTTTATTCAAGTGGGACCCTCGAGCTGCTGTTGGACCATCCAATCGCTTACTAGACCAGGTGGCTACTCCATCCGCCAGTGCTGTTGTTACCACGACGTTCTCAGTCCGACCGAGGGGTCTGGGTGGGCTGGAAGACTTGTTTCAGGCTTACGGTATCAGATACTACACCGCAACAAAGATAGCAGAGCTTGGATTCACCGTGAGTACTCTGTTGAACATGAAAGACGTAGAGCTGGACGATATGATGAACAGTCTCTCGCAGATATTCCGGTGGGACCTTTTGGTCGGAGAGAGGTACGGTATTAAAGCGGCTGTTAGAGCCGAGAGAAGACGACTGGAAGATGAAATGGATTCCCGGCGCCGCCACTTACTCTCCGCTGATACTGCTAATAACGCTTTTGATGCTCTCTCTCAGGAAGGTCGATTATCGGAGGAGCCTGTGCATCAGGAAAAGGAGGTGATCCGAAGCGGCGGAGGACCAAGGGAGTTGATTGCAGCTTCAGAGAAGAAGAGCCGGCGACGTCTGAAGGGGCAAAGAAAACTGCTAGTTGATTTGGATAACGACGGAAACGATGTAGGAGAAGAAGACGACGACGACATTAATGGTGGAAATGAAAGACAACGAGAACACCCGTTCATCGTGACAGAACCAGGAGAAGTTGCGAGAGGGAAGAAGAATGGCCTCGATTACCTCTTCCACCTTTACGAACAGTGCCGTGAATTTCTGATCCAGGTGCAGAATATAGCCAAGGACCGCGGCGAGAAATGCCCCACCAAGGTGACGAACCAGGTGTTTAGATACGCGAAGAAGGCCGGAGCGAGCTACATCAACAAGCCCAAAATGCGGCACTACGTCCACTGCTACGCGCTGCATTGCCTGGACGAGGAGGCATCGAATGCACTAAGAAGGGCGTTCAAAGAGAGTGGGGAGAACGTCGGAGCTTGGCGAGAAGCCTGCTACAAACCTCTGGTGCGCGTCGCCGCCCGGCAAGGGTGGGACATAGATGCGATATTTAACTCCCATCCTCGTTTGGCTATTTGGTACGTCCCCACCAAACTCCGGCAGCTTTGTCACTCTGACCGCAATAGCGTTGCAGCTTCGAGCTGTGTCTCCAATGGCCACGATTTCATTCCCTTCTGA 1167 52.7 MDPDAFTASLFKWDPRAAVGPSNRLLDQVATPSASAVVTTTFSVRPRGLGGLEDLFQAYGIRYYTATKIAELGFTVSTLLNMKDVELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRLEDEMDSRRRHLLSADTANNAFDALSQEGRLSEEPVHQEKEVIRSGGGPRELIAASEKKSRRRLKGQRKLLVDLDNDGNDVGEEDDDDINGGNERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKESGENVGAWREACYKPLVRVAARQGWDIDAIFNSHPRLAIWYVPTKLRQLCHSDRNSVAASSCVSNGHDFIPF 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49611494 49612804 + Bma028486.1 Bma08g01049 87876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01049 388 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 210 374 IPR035209 GO:0003677
Bma08g01049 388 MobiDBLite consensus disorder prediction 148 169 - -
Bma08g01049 388 MobiDBLite consensus disorder prediction 150 166 - -
Bma08g01049 388 PANTHER PROTEIN LEAFY 1 384 IPR002910 GO:0003677|GO:0006355
Bma08g01049 388 MobiDBLite consensus disorder prediction 194 214 - -
Bma08g01049 388 Pfam Floricaula / Leafy protein SAM domain 49 125 IPR035079 -
Bma08g01049 388 Gene3D Protein LEAFY 211 380 IPR038276 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57792 PF17538 C_LFY_FLO 5.50E-108 CL0123 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01049 - - vvi:100252653 582.793