Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01055 ATGCGGAATCTGGGTGAGGTGCTCATCTTGTTACTATTGGCTCCGGTGTTCGCGCGCGGGCTGAATCCCCCTCTGAACGATGATGTCTTGGGACTCATAGTGTTCAAGGCCGACATTCAAGATCCGAAGGGGAATCTTGCCTCTTGGAATGAAGACGATGATTGTCCGTGTAACTGGGTCGGCGTGCAATGTAACCCGAGATCCAGGCGGGTCACTGAGCTCAACCTTTCCGGATTCTCCCTCTCCGGTCGTCTAGGCCGAGGCCTCGTTCAGCTACAGTTTCTGCGAAGGCTATCGCTCTCAGACAACAATCTCACCGGAAATGTAGGCCCTAACATTGCACGGATCGATAATCTCCGAGTGATCGATTTGGGGAACAACGGCTTTTCAGGGAGTTTACCAAACGATTTCTTCAAGCAATGTGGGTCTTTGAGAATGGTTTCTCTGGCCGGGAACAAATTTTCAGGGAAAATCCCAGACAGTTTAACCTCATGCGCTGGTCTCGCTGCACTTAACTTATCATCCAATCAGTTCTCTGGTTCATTACCTTCTGGAATTTGGTCCCTAACTGGACTTCGCTCGCTTGATTTGTCGGATAATCTATTAGAGGGTAACATTCAGAAGGAGGTCGAAGGCTTGAATAATTTGCGAGCTATTAACTTGAGTAAGAACCGATTTTCTGGTCAGATTCCCGATGGAATCGGAAATTGTTTGCTCTTCCGCTCCATAGACCTCAGTGAGAATTCGTTTTCCGGCAACCTTCCAGACACCCTCCGGCGACTTTCTCTGTGTCATAATTTAAAGTTGCAGAAGAACTCATTTGTTGGCAAAGTTCCTGACTGGATACAAGAAATGAAAAGTCTAGAGACGGTGGATCTTTCGGGAAACACATTTTCTGGTCAGGTTCCTGATTCAGTCGGAAATCTCCCCTCGCTCAAGGTGTTGAATTTTTCAAGTAATGGCTTTACTGGTAGTTTGCCGGCGTCTCTGATTGATTGCCAGAGCTTAATGGTCTTAGATTTCAGTCATAATTCTATCTCCGGTGATTTCTCTACCTGGATTTCCAAAATGGGCTCACAAAATCTCTTGCTTTCAGAGAGCAAGCAGAGCAGAAGCCCGACTAGTTGGATATCTACTGTATCTGAGAAATCACTTCCAAATCTTAAAATCTTGGACCTATCTCACAATGCTTTCTCTGGTCTAATGCCGCCTGACATTGAGATTTTTGACAACCTACAGCTCTTAAACTTGGCCGGAAATTCTCTCGCCGGCGATATCCCAAAATCCATAGGAGGTCTGACGGCCCTGGATACCCTTGATTTGAGTGGGAATCGGCTAAATGGAAGTATTCCAGAGGAAATTTGTGAAGCCCCGGCCTTGAAGGTGCTGAAACTAGAGAAAAACTCTCTTGCAGGATCAATTCCTTGTTCAATTGGAAACTGTTCTTCTCTAATACCTGCATCGATGGCTAACCTTACTGATCTTCAAAATGTGGACTTGTCTTTTAACCTCCTCAATGGAACTCTCCCTAAGCAGCTCTCTGATCTTCCCAACCTACTCTTGTTCAATATTTCGCACAACGACATCCATGGTGACCTGCCTGCCGGAGGATTTTTCAACACCATATCCCCTTCCTCTGTCTCCGGCAATCCATCCCTCTGTGGCTCTGTTGTTAAGAAATCTTGCCCTGCAGTTCTTCCCAAACCCATTGTTCTTAACCCCAACTCGTCCTCTGACTCCACTGCAACTACTCTCCCTTCGGGTTTTGCTCGCAAGAGAATCATCCTCAGCGTATCAACTCTCATCGCCATTGGAGCAGCTGCTTTGATTGTGATTGGCGTAATAGCAATCACTGTGCTTAATATCCGAGTTCGATCATCCATTTCTCGTTCTGCAGCAGCCCTCGCTTTTTCTGGCGGAGATGACTTTAGTAACTCCCCCAGCACTGACGCCAATTCCGGCAAGCTTGTCATGTTTTCTGGCGACCCGGACTTCAGTACCGGGGCTCATGCTTTGCTCAATAAAGATTGTGAGCTTGGGAGGGGTGGATTTGGGACGGTCTACAAGACCCTTCTTCGGGATGGGCATCCAGTTGCAATCAAGAAGCTCACTGTCTCCAGTCTCGTCAAGTCCCAAGAAGACTTCGAAAGGGAAGTTAAGAAGTTGGGGAAAGTCCAGCACCGGAATATCATCACCCTTCATGGTTATTACTGGACTCCATCGCTGCAGCTCCTCATCGCTGAATTTGTTGCAGGAGGAAGTTTGTATTCGCACCTCCATGAAGTAACGGATGGAAACTTCCTCTCGTGGAATGAGAGCATCGCGTACTTACACCAAGTGAACATAATCCACTACAATATCAAGGCAAGCAACGTCTTGATTGACAGCTCCGGCGAACCAAAGATCGGAGATTTCGGCCTGGCAAAGCTATTGCCGATGCTAGACCGGTACGTTTTGAGCAGCAAGATTCAGAGTGCACTTGGCTATATGGCACCTGAATTTGCCTGTAAAACGGTGAAAATAACGGAAAAATGCGATGTTTATGGGTTTGGGGTTTTGGTATTGGAAGTGGTCACCGGAAAAAGACCGGTCGAGTACATGGAAGATGATGTGGTTGTTCTTTGTGACATGGTGCGAGGAGCATTGGAGGAAGGCAAGGTGGAAGAATGCGTCGACCGGAGGCTCTTGGGGAACTTTCCGGCCGAGGAAGCACTTCCGGTCATGAAATTAGGCTTGATCTGCACTTCTCAAGTGCCGTCAAACCGGCCAGACATGGCTGAGGTAGTAAATATATTGGAGCTGATACGATGCCCGTCAGAAGGCAACGACGAATCAGGATGA 2841 47.48 MRNLGEVLILLLLAPVFARGLNPPLNDDVLGLIVFKADIQDPKGNLASWNEDDDCPCNWVGVQCNPRSRRVTELNLSGFSLSGRLGRGLVQLQFLRRLSLSDNNLTGNVGPNIARIDNLRVIDLGNNGFSGSLPNDFFKQCGSLRMVSLAGNKFSGKIPDSLTSCAGLAALNLSSNQFSGSLPSGIWSLTGLRSLDLSDNLLEGNIQKEVEGLNNLRAINLSKNRFSGQIPDGIGNCLLFRSIDLSENSFSGNLPDTLRRLSLCHNLKLQKNSFVGKVPDWIQEMKSLETVDLSGNTFSGQVPDSVGNLPSLKVLNFSSNGFTGSLPASLIDCQSLMVLDFSHNSISGDFSTWISKMGSQNLLLSESKQSRSPTSWISTVSEKSLPNLKILDLSHNAFSGLMPPDIEIFDNLQLLNLAGNSLAGDIPKSIGGLTALDTLDLSGNRLNGSIPEEICEAPALKVLKLEKNSLAGSIPCSIGNCSSLIPASMANLTDLQNVDLSFNLLNGTLPKQLSDLPNLLLFNISHNDIHGDLPAGGFFNTISPSSVSGNPSLCGSVVKKSCPAVLPKPIVLNPNSSSDSTATTLPSGFARKRIILSVSTLIAIGAAALIVIGVIAITVLNIRVRSSISRSAAALAFSGGDDFSNSPSTDANSGKLVMFSGDPDFSTGAHALLNKDCELGRGGFGTVYKTLLRDGHPVAIKKLTVSSLVKSQEDFEREVKKLGKVQHRNIITLHGYYWTPSLQLLIAEFVAGGSLYSHLHEVTDGNFLSWNESIAYLHQVNIIHYNIKASNVLIDSSGEPKIGDFGLAKLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGVLVLEVVTGKRPVEYMEDDVVVLCDMVRGALEEGKVEECVDRRLLGNFPAEEALPVMKLGLICTSQVPSNRPDMAEVVNILELIRCPSEGNDESG 946
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 49657352 49662319 + Bma028494.1 Bma08g01055 87882
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01055 946 SUPERFAMILY L domain-like 41 359 - -
Bma08g01055 946 Gene3D Ribonuclease Inhibitor 362 483 IPR032675 -
Bma08g01055 946 Gene3D Ribonuclease Inhibitor 484 565 IPR032675 -
Bma08g01055 946 SUPERFAMILY Protein kinase-like (PK-like) 677 930 IPR011009 -
Bma08g01055 946 ProSiteProfiles Protein kinase domain profile. 673 935 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g01055 946 Pfam Protein kinase domain 676 871 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bma08g01055 946 Gene3D Phosphorylase Kinase; domain 1 667 749 - -
Bma08g01055 946 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Bma08g01055 946 Pfam Leucine rich repeat 411 470 IPR001611 GO:0005515
Bma08g01055 946 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Bma08g01055 946 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 5 943 - -
Bma08g01055 946 SMART LRR_sd22_2 492 518 - -
Bma08g01055 946 SMART LRR_sd22_2 92 121 - -
Bma08g01055 946 SMART LRR_sd22_2 189 215 - -
Bma08g01055 946 SMART LRR_sd22_2 433 456 - -
Bma08g01055 946 SMART LRR_sd22_2 385 414 - -
Bma08g01055 946 PRINTS Leucine-rich repeat signature 433 446 - -
Bma08g01055 946 PRINTS Leucine-rich repeat signature 388 401 - -
Bma08g01055 946 Gene3D Ribonuclease Inhibitor 286 361 IPR032675 -
Bma08g01055 946 Gene3D Transferase(Phosphotransferase) domain 1 750 944 - -
Bma08g01055 946 Gene3D Ribonuclease Inhibitor 26 183 IPR032675 -
Bma08g01055 946 Gene3D Ribonuclease Inhibitor 184 281 IPR032675 -
Bma08g01055 946 SUPERFAMILY RNI-like 266 538 - -
Bma08g01055 946 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 5 943 - -
Bma08g01055 946 ProSitePatterns Protein kinases ATP-binding region signature. 679 702 IPR017441 GO:0005524
Bma08g01055 946 SMART LRR_typ_2 385 411 IPR003591 -
Bma08g01055 946 SMART LRR_typ_2 433 457 IPR003591 -
Bma08g01055 946 SMART LRR_typ_2 309 333 IPR003591 -
Bma08g01055 946 SMART LRR_typ_2 492 516 IPR003591 -
Bma08g01055 946 SMART LRR_typ_2 116 140 IPR003591 -
Bma08g01055 946 SMART LRR_typ_2 189 212 IPR003591 -
Bma08g01055 946 SMART LRR_typ_2 213 237 IPR003591 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00995 Bma-Chr4:16141302 Bma08g01055 Bma-Chr8:49657352 0 dispersed
Bma06g01410 Bma-Chr6:50856720 Bma08g01055 Bma-Chr8:49657352 4.71E-19 dispersed
Bma08g01055 Bma-Chr8:49657352 Bma10g01166 Bma-Chr10:40786128 2.32E-122 dispersed
Bma10g00358 Bma-Chr10:3355467 Bma08g01055 Bma-Chr8:49657352 0 transposed
Bma03g00194 Bma-Chr3:1487957 Bma08g01055 Bma-Chr8:49657352 0 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
66678 PF00069 Pkinase 4.90E-39 CL0016 Bma PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01055 - - mcha:111006338 1353.19