Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01058 CTCTCTCTACACACAATGGCGGTGGCTGCATTGCCTGCTCTGTGCATTATGCTCCTGGCCCTCCACCTTAGCTCTGGTAGAAGTTATGGACAGTGGGAGAGCGGCCACGCCACATTCTACGGCGGTGGAGATGCGTCTGGCACGATGGGGGGAGCTTGTGGGTATGGGAACTTGTATAGCCAAGGGTACGGGACCAACACTGCTGCGTTGAGCACCACCTTGTTCAACAGCGGGCTGAGCTGCGGGAGCTGCTATGAGCTCACTTGCCGTGACGATCCAAAATGGTGCCTACCTGGCTCGATCGTCGTCACTGCTACTAACTTTTGCCCGCCAAACTATGCTTTGTCCAACGATGATGGCGGCTGGTGCAATCCTCCCCTCCAACACTTCGACTTGGCTGAGCCTGCTTTCCTCCAAATCGCGCAGTATCGAGCTGGAATCGTTCCTGTATCATTCAGAAGGGTCCCCTGCAACAAGAAAGGTGGAGTAAGGTTCACCATTAATGGACATTCTTACTTCATCTTAGTTCTGGTGACGAACGTCGGAGGTGCAGGAGACGTTCATTCAGTCTCGATCAAGGGATCAAGCACAGCGTGGCAGCCAATGTCGAGGAACTGGGGGCAGAACTGGCAGAGCAACTCTCAGCTCAACGGTCAGAGCCTCTCTTTCCAAGTCACCACCAGCGATGGCCGCTCTATCGCTAGTTACGACGTTGCCCCGGCTGGTTGGCAGTTCGGCCAAACTTTCGAGGGAAGCCAATTCTAG 765 54.9 LSLHTMAVAALPALCIMLLALHLSSGRSYGQWESGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTTLFNSGLSCGSCYELTCRDDPKWCLPGSIVVTATNFCPPNYALSNDDGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCNKKGGVRFTINGHSYFILVLVTNVGGAGDVHSVSIKGSSTAWQPMSRNWGQNWQSNSQLNGQSLSFQVTTSDGRSIASYDVAPAGWQFGQTFEGSQF 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49674715 49675654 + Bma028497.1 Bma08g01058 87885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01058 254 SUPERFAMILY Barwin-like endoglucanases 31 180 IPR036908 -
Bma08g01058 254 Gene3D - 20 158 IPR036908 -
Bma08g01058 254 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 62 76 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 237 253 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 89 100 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin signature 208 229 IPR002963 GO:0009664
Bma08g01058 254 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576
Bma08g01058 254 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576
Bma08g01058 254 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Bma08g01058 254 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576
Bma08g01058 254 PRINTS Expansin/Lol pI family signature 199 213 IPR007118 GO:0005576
Bma08g01058 254 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Bma08g01058 254 Pfam Expansin C-terminal domain 163 240 IPR007117 -
Bma08g01058 254 SUPERFAMILY PHL pollen allergen 159 251 IPR036749 -
Bma08g01058 254 Pfam Lytic transglycolase 67 152 IPR009009 -
Bma08g01058 254 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 251 IPR007117 -
Bma08g01058 254 PANTHER EXPANSIN 14 254 - -
Bma08g01058 254 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 162 IPR007112 -
Bma08g01058 254 SMART dpbb_1 67 152 IPR007112 -
Bma08g01058 254 Gene3D - 159 254 IPR036749 -
Bma08g01058 254 PANTHER EXPANSIN-A15 14 254 IPR002963 GO:0009664
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01058 Bma-Chr8:49674715 Bma15g00149 Bma-Chr15:1543263 1.05E-139 dispersed
Bma12g00887 Bma-Chr12:40166936 Bma08g01058 Bma-Chr8:49674715 1.15E-60 dispersed
Bma01g01297 Bma-Chr1:17676862 Bma08g01058 Bma-Chr8:49674715 4.13E-97 transposed
Bma13g00283 Bma-Chr13:4775413 Bma08g01058 Bma-Chr8:49674715 3.83E-92 transposed
Bma03g00200 Bma-Chr3:1535352 Bma08g01058 Bma-Chr8:49674715 5.39E-151 wgd
Bma03g00191 Bma-Chr3:1466600 Bma08g01058 Bma-Chr8:49674715 1.37E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01058 - K20628 mnt:21394504 405.216