Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01069 ATGGATCTTGAAAAGGCAAACACAGTCTTATCAACCGTTTACTTTTCTGGTTTTAATGTCGTCAGGGAGAGGTTTGATGAGATAGGGAAGAAGATAAAAAGAGAAACGGATGCCAATGCCTACTATCAAATGAGAAGAAGAAACGTAGTAGGGCGCCCTCATGGAGCTCTAAACACCGTAACGCCATGCGCAGCCTGTAAGCTCCTCAGACGAAGGTGCGCGCAAGAGTGCCCTTTTTCTCCATATTTCTCTCCCCACGAGCCTCAAAAGTTTGCTTCTGTTCACAAAGTCTTCGGCGCCAGCAACGTCTCCAAGATGCTAATGGAGGTGTCGGAGAGTCAAAGAGCAGACACTGCTAATAGTCTGGTTTTCGAGGCCAACTTGAGGTTAAGAGACCCGGTCTACGGCTGCATGGGTGCGATTTCAGCTTTGCAACAGCAAGTTCAATCTTTACAGGCTGAGCTTAATGCAGTAAGGAGTCAGATAATGAAATTCAAATTGACTGAATCAAATATTCTACCTTCTTCTCAAGTCCCTCTTCTCAATTCTTCCCGAGCCGTTTCAGTCGCTGCACCGGCACCGCCGCCGCCGTCAACTCCACCCCCGCGTCTTGCTCTACCTCCCCCTTCCTCCGTCTACCGCCAGCAGCCCAGCAACCCCCCTGACTATTGCACACTGTCTGAAAATATCGTCTACTTCGCCTAA 705 49.08 MDLEKANTVLSTVYFSGFNVVRERFDEIGKKIKRETDANAYYQMRRRNVVGRPHGALNTVTPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVSESQRADTANSLVFEANLRLRDPVYGCMGAISALQQQVQSLQAELNAVRSQIMKFKLTESNILPSSQVPLLNSSRAVSVAAPAPPPPSTPPPRLALPPPSSVYRQQPSNPPDYCTLSENIVYFA 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49714152 49714961 + Bma028510.1 Bma08g01069 87896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01069 234 MobiDBLite consensus disorder prediction 190 208 - -
Bma08g01069 234 Coils Coil 141 168 - -
Bma08g01069 234 ProSiteProfiles LOB domain profile. 61 162 IPR004883 -
Bma08g01069 234 Pfam Lateral organ boundaries (LOB) domain 62 159 IPR004883 -
Bma08g01069 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 43 233 - -
Bma08g01069 234 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 43 233 - -
Bma08g01069 234 MobiDBLite consensus disorder prediction 188 221 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00208 Bma08g01069 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01069 Bma-Chr8:49714152 Bma14g00879 Bma-Chr14:9901680 6.03E-46 dispersed
Bma09g00533 Bma-Chr9:42100715 Bma08g01069 Bma-Chr8:49714152 8.69E-23 transposed
Bma03g00208 Bma-Chr3:1569533 Bma08g01069 Bma-Chr8:49714152 6.37E-82 wgd
Bma03g00188 Bma-Chr3:1449246 Bma08g01069 Bma-Chr8:49714152 8.32E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57796 PF03195 LOB 1.30E-39 No_clan Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01069 - - mesc:110618830 274.248