Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01076 ATGGGCGCTTATAAACAAGAGCCGAAAGTGAATTTGGTGTCTTTCGATTCTTTGAGGAAGAGGAAACCTCGGGGAAGACGAGATGGATCTACTGTCGCCGATACTTTAGCAAAGTGGCAGGCATATAATAAGAGTCTAGATACTTGTGACATTAAGGGTGAACCAATGGGGAGAACACCAGCAAAAGGATCAAAGAAAGGATGTATGAAAGGGAAGGGAGGGCCTGAAAATTCACGGTGTAATTACAGAGGAGTGAGGCAGAGGACTTGGGGCAAGTGGGTTGCTGAAATACGGGAACCCAACCGATGTAACAGACTCTGGCTCGGAACTTTTCCAACTGCTATGGAAGCTGCGCTGGCCTATGATGAAGCTGCAAGGGCCATGTATGGTCAGAATGCACGCCTTAATTTTCCCAACGTGAGAAAACAAGCTCTGACCTATGATGAAGCTGCACTGGCGTATGATGAAGCTGCAAGGGCCATGTGTGGTCAGAATGCACGCCTTAATTTTCCCAACGTGAGAAAACAAGCTCAAGTTAATGGAGATTCGAGAGTGAATTTTTCAGGTTCAGCAGAGGTGCATTCTCCATCAGCAGCCACTTCGACGGGTTCTTATTCTGTTTCATCTATGACCAGTTCTATGATTGTAAAGAATGAGAATGGAGATCATGAAACTGACGTTCTCTCATCAAGTGGAGTGGAAGGATTGAACGTACTGTGGGATGACTTGGAGAAGTTTCCGATGGATGAAATGTTCGATGCGGAAGAATTGAATGAGCTCATGGACAGTAATCCACTTTGTGAGTCTAGCTTGATGGAAAATTTATCCGGCACGGATAGTAATTTGAAACTCCTTGAAGCTGATGATCTTGATCTTCACAAACCAGCAAATTTATCCTATCAACTGCAAAATCCAGATGCAAAGTTGCTTGGAAGTTTGAATCACATGGAGCAGGCAGATTTGGAGGCGGATTACTGTGACTTCTTGAAGCCAGAAAACGAAGAAGGCCGCATGAACAATGTTGGTGGATGGCCTGGGTACATTGATTTGGGATTACTTGATTTGGATTTTTGA 1074 44.51 MGAYKQEPKVNLVSFDSLRKRKPRGRRDGSTVADTLAKWQAYNKSLDTCDIKGEPMGRTPAKGSKKGCMKGKGGPENSRCNYRGVRQRTWGKWVAEIREPNRCNRLWLGTFPTAMEAALAYDEAARAMYGQNARLNFPNVRKQALTYDEAALAYDEAARAMCGQNARLNFPNVRKQAQVNGDSRVNFSGSAEVHSPSAATSTGSYSVSSMTSSMIVKNENGDHETDVLSSSGVEGLNVLWDDLEKFPMDEMFDAEELNELMDSNPLCESSLMENLSGTDSNLKLLEADDLDLHKPANLSYQLQNPDAKLLGSLNHMEQADLEADYCDFLKPENEEGRMNNVGGWPGYIDLGLLDLDF 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49798943 49800134 + Bma028517.2 Bma08g01076 87903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01076 357 Pfam AP2 domain 80 130 IPR001471 GO:0003700|GO:0006355
Bma08g01076 357 MobiDBLite consensus disorder prediction 53 73 - -
Bma08g01076 357 CDD AP2 80 140 IPR001471 GO:0003700|GO:0006355
Bma08g01076 357 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Bma08g01076 357 SUPERFAMILY DNA-binding domain 81 138 IPR016177 GO:0003677
Bma08g01076 357 Gene3D AP2/ERF domain 145 173 IPR036955 GO:0003700|GO:0006355
Bma08g01076 357 Gene3D AP2/ERF domain 81 140 IPR036955 GO:0003700|GO:0006355
Bma08g01076 357 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 139 - -
Bma08g01076 357 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 148 262 - -
Bma08g01076 357 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Bma08g01076 357 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Bma08g01076 357 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Bma08g01076 357 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 17 139 - -
Bma08g01076 357 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 148 262 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00223 Bma-Chr4:1900041 Bma08g01076 Bma-Chr8:49798943 2.97E-27 dispersed
Bma08g01076 Bma-Chr8:49798943 Bma10g00201 Bma-Chr10:1794138 8.64E-34 dispersed
Bma08g01076 Bma-Chr8:49798943 Bma05g00143 Bma-Chr5:4315509 2.23E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57799 PF00847 AP2 3.60E-14 CL0081 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01076 - K09286 zju:107413944 290.041