Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01081 ATGTGCCTGGAGTCAAGTATTGAGCTTCATCCCTCAAATTTTATCATGGAAAATGAAATTCCGAGCCAAAACAATGGAAATATCGTCAAGAGCTCGATTTTGCTTGAATTATCAGCCTCTGATGATCTCGATGCCTTCAGAAGAGAAGTAGAAGAGAAGGGGCTCCATATAAATGAGTTAGCGTATTGGTACAGCAGGAAAATTGGGTCTAGAAAGATGGGTTTCGAGGAAAGGACCCCACTTCTAATTGCAGCCATGTTTGCAAGTGCTAAGATCGTGAAATATATAATCGAATCTGGCAAAGTCGATGTGAACAAGGCATATGGTTCAGACAAGGTCACTGCTCTCCACTGTGCCGTTGCCGGTGGCTCAAGCCATTCGACTGAGATTATCAAACTCTTACTCGATGCCTCTGCAGATGCTAGTTGTGTTGATTCTAACGGCAAGAAGCCAGTCGATTTGATCACCCACTCTACGAAATCACTTCCCAATCCAAGGAGGAAGGCAATGGAGATGTTTCTGAAAGGTGATTATTTGGGTGGTGAAGTTGCTCAAAGAAATGAGCAATCGGAAGATCAGCAGAAGCTTCCTGAGAGGAAAGAATATCCTCTTGATGTTTCCCTGCCAGACATAAACACTGGAATTTACGGAACCGACGAGTTTAGAATGTATAGTTTTAAGGTTAAGCCTTGTTCGAGGGCGTATACTCACGATTGGACCGAATGCCCTTTTGCTCATCCCGGAGAGAATGCAAGGCGGCGGGATCCACGAAAATATCCATACAGTTGTGTTCCTTGTCCTGAGTTTCGCAAAGGGGCTTGCCAGAAAGGTGATGTCTGTGAATATGCTCATGGAGTCTTCGAATCATGGCTTCACCCTGCACAATACAAGACCAGAATCTGCAAGGACGAGATCAGATGTGGGAGGAAAGTATGCTTCTTCGCTCACAAGCCTGAAGAATTAAGGCCGGTCTATGCCTCTACGGGCTCGGCCTTGCCATCGCCTTGCTCACATTCTGTCAGCAGCCCAGAAATGGGGGCTTTGTCTCTTCCTGCTACTTCTACACCGCCTATGTCTCCTTTGGGACCTGTCTCATCACCCATGAGTGCAGCCTTGTGGCAAAACAAAGTTACCCTTACACCTCCTGCTTTGCAGTTGCCGGGTAGCCGACTGAAGACTTCTTCAAGCGTGAGAGACTTAGATTTCGAAATGGAATTGCTCAGCTTGGAGAATCGAACCAATCAACAGCAACAATATCAGCATTTAGTGGATGAGATTTCTCGTCTCTCCTCTCCTACCTACCGGAGCAATGATTTTAGAAGGAACGGAGAACTGAAACAGACTAACTATGGTGATATGTTTGGAAATTTGGATTCTCCCATGTTGTCTCAGCTGCATGGGCTTTCACAATCAACGCCAACTCAATTGCAACATGGGCTTCAAACAAGCCAGAGAATGAATCAACTTCGATCAAGTTACCCAACAAAGCTCTCCTCTTCACCGGTGAGGAAACCTTCTCCATTTGGGCTCGACTCATCTGCAGCAGTGGCATCTGCCGTGATGAACTCCAGATCCTCAGCCTTTGCAAAGCGGAGCCAGAGTTTCATCGATCGTGCCGCCCCGGCCCACCTCTCAGGGCCTACTGCCCCTTCAAATTTGTCGGCATGGGGCTCCCCAGATGGGAAATTAGATTGGAGCGTTCAAGGAGATGATCTAAATAAACTGAAAAAATCAGCTTCTTTTGGATTCAGAGCTAGAGCCGCTGGCTCGATGCCATCTGCTCTCGACGAGCCAGACGTGTCGTGGGTCAACTCATTGGTTAAGGATGTTCCTTTGGAGAAATCCGGCTCTTTTTGTGCCGATAAGCTGGCATACAGCCGTGGGAAGGCCGGGTCTTGA 1899 47.29 MCLESSIELHPSNFIMENEIPSQNNGNIVKSSILLELSASDDLDAFRREVEEKGLHINELAYWYSRKIGSRKMGFEERTPLLIAAMFASAKIVKYIIESGKVDVNKAYGSDKVTALHCAVAGGSSHSTEIIKLLLDASADASCVDSNGKKPVDLITHSTKSLPNPRRKAMEMFLKGDYLGGEVAQRNEQSEDQQKLPERKEYPLDVSLPDINTGIYGTDEFRMYSFKVKPCSRAYTHDWTECPFAHPGENARRRDPRKYPYSCVPCPEFRKGACQKGDVCEYAHGVFESWLHPAQYKTRICKDEIRCGRKVCFFAHKPEELRPVYASTGSALPSPCSHSVSSPEMGALSLPATSTPPMSPLGPVSSPMSAALWQNKVTLTPPALQLPGSRLKTSSSVRDLDFEMELLSLENRTNQQQQYQHLVDEISRLSSPTYRSNDFRRNGELKQTNYGDMFGNLDSPMLSQLHGLSQSTPTQLQHGLQTSQRMNQLRSSYPTKLSSSPVRKPSPFGLDSSAAVASAVMNSRSSAFAKRSQSFIDRAAPAHLSGPTAPSNLSAWGSPDGKLDWSVQGDDLNKLKKSASFGFRARAAGSMPSALDEPDVSWVNSLVKDVPLEKSGSFCADKLAYSRGKAGS 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 49860477 49862375 - Bma028523.2 Bma08g01081 87908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01081 632 Pfam Ankyrin repeats (3 copies) 72 142 IPR002110 GO:0005515
Bma08g01081 632 ProSiteProfiles Zinc finger C3H1-type profile. 260 287 IPR000571 GO:0046872
Bma08g01081 632 MobiDBLite consensus disorder prediction 481 506 - -
Bma08g01081 632 Gene3D - 261 323 - -
Bma08g01081 632 SMART c3hfinal6 260 286 IPR000571 GO:0046872
Bma08g01081 632 SMART c3hfinal6 295 318 IPR000571 GO:0046872
Bma08g01081 632 ProSiteProfiles Ankyrin repeat profile. 111 146 IPR002110 GO:0005515
Bma08g01081 632 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 17 614 - -
Bma08g01081 632 SUPERFAMILY Ankyrin repeat 32 157 IPR036770 -
Bma08g01081 632 PANTHER UNKEMPT FAMILY MEMBER 17 614 IPR045234 -
Bma08g01081 632 Gene3D - 30 174 IPR036770 -
Bma08g01081 632 MobiDBLite consensus disorder prediction 481 507 - -
Bma08g01081 632 SMART ANK_2a 111 143 IPR002110 GO:0005515
Bma08g01081 632 SMART ANK_2a 76 106 IPR002110 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma03g00245 Bma08g01081 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01081 Bma-Chr8:49860477 Bma13g00133 Bma-Chr13:1338580 2.54E-140 dispersed
Bma03g00245 Bma-Chr3:1885483 Bma08g01081 Bma-Chr8:49860477 0 wgd
Bma03g00176 Bma-Chr3:1352233 Bma08g01081 Bma-Chr8:49860477 0 wgd
Bma07g00064 Bma-Chr7:1482967 Bma08g01081 Bma-Chr8:49860477 7.83E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57800 PF12796 Ank_2 3.90E-07 CL0465 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01081 - - rcn:112182990 837.025