Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01106 ATGGCTGAGATTTGCTGTGAGCTTATTGGGGAAGGTGAAGCTCCGGCAGCTGTAGAGACCAGCTCTCGAGCTACAAGACGCCGGAGAATGGAGGCCTGTCCTATTGTGTTGATGGCAGACGCTACTCTTCCTCCTCCGGCGATGGAGAACGGCCGAAAACGCCTGAAAACGGATGGTCCCCCGCGGGAGTGCGACAACGCTGTGGAGAATTGTACTCTTGTGACGAACAGGGTTGAGGAGAGAGATGGAGAAGATTCCAATGAGGGAAACTGTCATGAGAACCAATCGGTTTCTCTCTCCAACGCTTCGAATATTGGTATAATCGAGAATGAAATTTGGCGTCCTAAGTTCGGGGTGACTTCCATTTGTGGAAGGAGGAGAGAAATGGAAGATGCGGTGTCAATTCACCCATCTTTCTGCTCTCAGAAAGAAGAAGACACGGAAAAGCTTCATCTTTTCGGAGTATTCGACGGCCATGGTTGCTCTCATGTTGCGAAAAAGTGTCAAAAGCGGTTACATGAGATTATAAAAGAAGAGATCAAACAAGGAGGAGAGACGATGGACTGGAAGAAAACGATGGAGAAGTGCTATGTACGAATGGACGAGGAGTTGAAGCAGCGTTCTAATGGAGTCAGAAGCTTTAATTGCAGGTGCGAACTTCAAGCTTCACAGAGCGATGCTGTTGGATCTACGGCTGTTGTAGCAGTTGTCACCCCCGACAAAATCATCGTCTCCAACTGCGGCGACTCCCGTGCGTTGCTTTGCCGGAATGGGGTAGTAATCCCTCTCTCGTCCGATCACAAGCCTGATAGACCCGACGAACTGGAGCGAATAGAAGCCGCTGGCGGGCGGGTGATTTATTGGGACGGACCAAGAGTACTCGGAGTTCTAGCGATGTCGAGAGCCATCGGAGATAACTACCTGAAACCTTACGTTATTCCGGTACCGGAGGTGACAATAACTGATCGGACGGCGGAGGATGAGTGTCTAATCATAGCAAGCGACGGTCTTTGGGACGTAGTGAAAAACGAGACGGCGTGTGGCGTGGCGCGTATGTGTCTCCGGTCTCAGAGCTCAACCCAAGGGCCGTCAATAAGATCGCCGGGAGTGGATTCTGGGGGGAGATATGTCGGACAAAACATGCTCGGACGCTTCGATTTTGCTGACGAAGTTGGCACTGGCGAGGCATAG 1191 51.22 MAEICCELIGEGEAPAAVETSSRATRRRRMEACPIVLMADATLPPPAMENGRKRLKTDGPPRECDNAVENCTLVTNRVEERDGEDSNEGNCHENQSVSLSNASNIGIIENEIWRPKFGVTSICGRRREMEDAVSIHPSFCSQKEEDTEKLHLFGVFDGHGCSHVAKKCQKRLHEIIKEEIKQGGETMDWKKTMEKCYVRMDEELKQRSNGVRSFNCRCELQASQSDAVGSTAVVAVVTPDKIIVSNCGDSRALLCRNGVVIPLSSDHKPDRPDELERIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVIPVPEVTITDRTAEDECLIIASDGLWDVVKNETACGVARMCLRSQSSTQGPSIRSPGVDSGGRYVGQNMLGRFDFADEVGTGEA 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50040361 50041740 - Bma028548.1 Bma08g01106 87933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01106 396 Gene3D - 113 373 IPR036457 -
Bma08g01106 396 CDD PP2Cc 116 358 IPR001932 -
Bma08g01106 396 Pfam Protein phosphatase 2C 117 358 IPR001932 -
Bma08g01106 396 SMART PP2C_4 104 377 IPR001932 -
Bma08g01106 396 ProSiteProfiles PPM-type phosphatase domain profile. 116 396 IPR001932 -
Bma08g01106 396 PANTHER ALPHABET, ISOFORM E-RELATED 46 361 - -
Bma08g01106 396 ProSitePatterns PPM-type phosphatase domain signature. 152 160 IPR000222 GO:0043169
Bma08g01106 396 SUPERFAMILY PP2C-like 111 359 IPR036457 -
Bma08g01106 396 PANTHER PROTEIN PHOSPHATASE 2C 37 46 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma05g00875 Bma-Chr5:46405842 Bma08g01106 Bma-Chr8:50040361 4.74E-87 dispersed
Bma08g01106 Bma-Chr8:50040361 Bma14g00520 Bma-Chr14:5779888 1.10E-117 dispersed
Bma11g00104 Bma-Chr11:1042831 Bma08g01106 Bma-Chr8:50040361 3.41E-108 wgd
Bma03g00142 Bma-Chr3:1069355 Bma08g01106 Bma-Chr8:50040361 0 wgd
Bma07g00086 Bma-Chr7:1652327 Bma08g01106 Bma-Chr8:50040361 1.91E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01106 K14497 - jre:108983349 445.277