Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01108 ATGGCGAATTGGTGGTGGACTGGAAATGCCGCCATGAAAGGCAGGAACCCTTTGTCATCTCCGCCGTCTCTTCACCTGAGAAACCCAGAGGAAGATCATACCGAAAGGAGCCGATTTGGAAGCAGAAGAGAGCAAGAATTCATGGATATGAACCATAGCAACAATAACACAACTCTCACAAATAATAGCACGAAGAAGCGAATTCTTGTAGAGGACGAAGGCAACCAAGATTTTGATCCAGATACTGAAGATCCAAACTCCGGCGACCAAGAGAGTATTGAACCAGGCCCCGGAAGCTCCAACCGCCGGCCTCGCGGCCGACCATCTGGGTCTAAGAACAAGCCGAAACCGCCGATTGTGATAACCAAAGAGAGCCCCAATACTCTCCGAAGCCATGTGTTGGAAATCAGCAGCGGCAGCGACATAGCGGAGAGCATAGCCACCTTCTCTCAACGCCGACAAAGAGGAGTCTCCGTTCTAAGTGGCAATGGCGTCGTCACCAACGTTACCCTCCGGCAACCCTCTGCGCCTAGTGGAGTCCTCAATCTCCATGGAAGCTTCGAGATCTTGACTCTCACCGGCGCTTTTTTGCCAGCCCCATCACCTCCTGGATCTTCTGGGCTGACTATTTACTTAGCAGGTGGGCAAGGTCAAGTACTTGGTGGCTCGGTGGTGGGCTCTCTAAGTGGCGGCCGGGCCAGTGATGTTGATTGTAGCAACGTTCACAAACGCGATATATGA 741 52.23 MANWWWTGNAAMKGRNPLSSPPSLHLRNPEEDHTERSRFGSRREQEFMDMNHSNNNTTLTNNSTKKRILVEDEGNQDFDPDTEDPNSGDQESIEPGPGSSNRRPRGRPSGSKNKPKPPIVITKESPNTLRSHVLEISSGSDIAESIATFSQRRQRGVSVLSGNGVVTNVTLRQPSAPSGVLNLHGSFEILTLTGAFLPAPSPPGSSGLTIYLAGGQGQVLGGSVVGSLSGGRASDVDCSNVHKRDI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50062189 50062929 + Bma028549.1 Bma08g01108 87935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01108 246 Gene3D - 129 232 - -
Bma08g01108 246 MobiDBLite consensus disorder prediction 50 65 - -
Bma08g01108 246 Pfam Plants and Prokaryotes Conserved (PCC) domain 130 228 IPR005175 -
Bma08g01108 246 MobiDBLite consensus disorder prediction 1 127 - -
Bma08g01108 246 ProSiteProfiles PPC domain profile profile. 126 246 IPR005175 -
Bma08g01108 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 228 IPR014476 GO:0003680
Bma08g01108 246 MobiDBLite consensus disorder prediction 26 49 - -
Bma08g01108 246 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 16 228 - -
Bma08g01108 246 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 227 - -
Bma08g01108 246 CDD DUF296 130 228 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g01108 Bma08g01008 CCT
Bma03g00284 Bma08g01108 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01108 Bma-Chr8:50062189 Bma02g01165 Bma-Chr2:53776721 9.58E-61 dispersed
Bma03g00284 Bma-Chr3:2105603 Bma08g01108 Bma-Chr8:50062189 4.56E-94 wgd
Bma03g00140 Bma-Chr3:1061309 Bma08g01108 Bma-Chr8:50062189 3.52E-133 wgd
Bma08g01008 Bma-Chr8:49104811 Bma08g01108 Bma-Chr8:50062189 9.09E-90 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01108 - - pvy:116109134 257.299