Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01113 CTGAGTATTGTCTCTTTAATAGCATTCATCGCAGTCTCTGATCAGGCAACAATTGCAGGAGCATCCAGCGGTGTTGGAGCTTGGCAGGGAGCTCACGCTACCTTCTATGGCGGCAGCGACGCCTCTGGAACAATGGGAGGAGCGTGTGGTTATGGAAACTTGTACAGTCAAGGCTATGGAGTCAACACTGCTGCATTGAGCACAGCTCTGTTCAACAAAGGAGAGAGCTGTGGAGCTTGCTTCGAGATAAAGTGCGCAAACGACCCACAATGGTGTCATTCCGGCAGCCCTTCAATCTTCGTCACCGCCACCAACTTTTGCCCGCCGAACTACGCTCTACCAAACGATAACGGCGGCTGGTGTAACCCTCCTCGCACCCACTTCGACCTTTCTATGCCCGTTTTCCTCAAGATCGCCGAGTATCGCGCCGGAATCGTCCCCGTATCTTACCGGAGGGTCCCCTGTAGAAAGCGAGGAGGCGTCAGATTCACGATCAACGGCTTCAGATACTTCAATTTGGTTTTGATCACCAACGTGGGTGGCGCCGGAGACATAGTGAGGGTTAGCGTGAAGGGGTCGAGGAGTGGGTGGATCAGCATGAGCCGGAACTGGGGTCAGAACTGGCAGTCCAACTCCGTTCTGGTCGGCCAGTCTCTCTCTTTCCAGCTCACCGCCAGCGACGGCCGCATCTCCACCTCATGGAACGCCGTTCCTTCCCATTGGCAATTCGGTCAAACTTTCGCCGGCGACAATTTC 756 54.89 LSIVSLIAFIAVSDQATIAGASSGVGAWQGAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGESCGACFEIKCANDPQWCHSGSPSIFVTATNFCPPNYALPNDNGGWCNPPRTHFDLSMPVFLKIAEYRAGIVPVSYRRVPCRKRGGVRFTINGFRYFNLVLITNVGGAGDIVRVSVKGSRSGWISMSRNWGQNWQSNSVLVGQSLSFQLTASDGRISTSWNAVPSHWQFGQTFAGDNF 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50094989 50095827 + Bma031482 Bma08g01113 87940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01113 252 Pfam Expansin C-terminal domain 161 238 IPR007117 -
Bma08g01113 252 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 170 249 IPR007117 -
Bma08g01113 252 PANTHER EXPANSIN-A6 2 252 - -
Bma08g01113 252 PRINTS Expansin signature 135 148 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 235 251 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 159 171 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 118 135 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 206 227 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 99 109 IPR002963 GO:0009664
Bma08g01113 252 PRINTS Expansin signature 171 192 IPR002963 GO:0009664
Bma08g01113 252 Gene3D - 160 252 IPR036749 -
Bma08g01113 252 SMART dpbb_1 63 150 IPR007112 -
Bma08g01113 252 PRINTS Expansin/Lol pI family signature 235 249 IPR007118 GO:0005576
Bma08g01113 252 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Bma08g01113 252 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Bma08g01113 252 PRINTS Expansin/Lol pI family signature 143 159 IPR007118 GO:0005576
Bma08g01113 252 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Bma08g01113 252 PRINTS Expansin/Lol pI family signature 197 211 IPR007118 GO:0005576
Bma08g01113 252 PANTHER EXPANSIN-A15 2 252 IPR002963 GO:0009664
Bma08g01113 252 Pfam Lytic transglycolase 63 150 IPR009009 -
Bma08g01113 252 SUPERFAMILY Barwin-like endoglucanases 27 178 IPR036908 -
Bma08g01113 252 Gene3D - 12 156 IPR036908 -
Bma08g01113 252 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 160 IPR007112 -
Bma08g01113 252 SUPERFAMILY PHL pollen allergen 157 248 IPR036749 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g01113 Bma08g01001 CCT
Bma08g01113 Bma08g01001 ECH
Bma08g01001 Bma08g01113 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma01g01865 Bma-Chr1:68418003 Bma08g01113 Bma-Chr8:50094989 1.42E-150 dispersed
Bma04g00671 Bma-Chr4:6450942 Bma08g01113 Bma-Chr8:50094989 1.35E-152 dispersed
Bma08g01113 Bma-Chr8:50094989 Bma06g00699 Bma-Chr6:37211612 1.15E-126 dispersed
Bma12g00124 Bma-Chr12:1846061 Bma08g01113 Bma-Chr8:50094989 8.91E-91 transposed
Bma12g00112 Bma-Chr12:1746745 Bma08g01113 Bma-Chr8:50094989 3.15E-89 transposed
Bma11g00114 Bma-Chr11:1110498 Bma08g01113 Bma-Chr8:50094989 1.08E-153 wgd
Bma07g00098 Bma-Chr7:1745475 Bma08g01113 Bma-Chr8:50094989 4.54E-153 wgd
Bma08g01001 Bma-Chr8:49073113 Bma08g01113 Bma-Chr8:50094989 6.95E-149 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01113 - - gmx:100803242 456.832