Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01117 ATGGCTGACGCTGAGGACATTCAACCTCTTGTTTGTGACAATGGGACAGGAATGGTTAAGGCTGGATTTGCAGGAGATGATGCTCCCCGAGCTGTGTTTCCTAGCATTGTAGGCCGTCCTCGCCACACTGGTGTTATGGTTGGTATGGGTCAGAAAGATGCATATGTTGGTGATGAGGCTCAATCAAAACGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTCAGCAACTGGGATGATATGGAAAAGATATGGCATCACACTTTCTATAATGAGCTCCGAGTGGCCCCAGAAGAGCACCCAGTGCTCCTAACTGAGGCTCCTCTGAACCCAAAGGCCAATCGTGAGAAAATGACCCAAATTATGTTTGAAACCTTCAATACCCCTGCTATGTATGTAGCCATTCAAGCTGTTCTTTCACTGTATGCCAGTGGCCGTACAACTGGTATCGTGTTGGATTCAGGTGATGGTGTCAGTCATACAGTTCCAATCTACGAAGGATATGCTCTTCCGCATGCCATCCTACGTCTTGACCTGGCTGGGCGTGATCTCACTGATAACTTAATGAAAATTCTCACTGAGCGTGGGTACTCTTTTACTACCACAGCTGAGCGTGAAATCGTGAGGGATATGAAGGAAAAGTTGGCATATATTGCTCTTGACTTTGAGCAGGAGATGGAAACTGCCAAGACTAGCTCATCAGTTGAGAAGAGCTATGAGTTGCCCGACGGGCAGGTCATCACCATTGGTGCTGAGCGCTTCCGATGCCCAGAAGTTCTTTTCCAGCCATCAATGATTGGAATGGAAGCAGCAGGCATTCATGAAACCACTTATAATTCCATCATGAAGTGTGATGTGGATATCAGGAAAGACCTTTATGGAAACATTGTCCTTTCTGGTGGTTCAACCATGTTCCCAGGCATTGCTGATAGAATGAGCAAGGAAATTTCCGCTCTTGCCCCAAGCAGCATGAAGATTAAGGTCGTGGCACCACCAGAGAGAAAATACAGTGTCTGGATTGGAGGCTCCATCTTGGCTTCTTTGAGCACCTTCCAGCAGATGTGGATTGCAAAGGCAGAGTACGACGAATCTGGGCCGTCTATTGTTCATAGGAAGTGCTTCTAA 1134 46.56 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTTAEREIVRDMKEKLAYIALDFEQEMETAKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50119908 50121536 - Bma028556.3 Bma08g01117 87944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01117 377 Pfam Actin 5 377 IPR004000 -
Bma08g01117 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Bma08g01117 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Bma08g01117 377 PANTHER ACTIN 1 376 IPR004000 -
Bma08g01117 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Bma08g01117 377 SMART actin_3 7 377 IPR004000 -
Bma08g01117 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Bma08g01117 377 Gene3D - 140 340 - -
Bma08g01117 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Bma08g01117 377 Gene3D - 10 371 - -
Bma08g01117 377 PANTHER ACTIN-97 1 376 - -
Bma08g01117 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Bma08g01117 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Bma08g01117 377 PRINTS Actin signature 51 62 IPR004000 -
Bma08g01117 377 PRINTS Actin signature 238 254 IPR004000 -
Bma08g01117 377 PRINTS Actin signature 63 85 IPR004000 -
Bma08g01117 377 PRINTS Actin signature 142 161 IPR004000 -
Bma08g01117 377 PRINTS Actin signature 28 37 IPR004000 -
Bma08g01117 377 PRINTS Actin signature 117 130 IPR004000 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g01117 Bma-Chr8:50119908 Bma09g00406 Bma-Chr9:34211262 0 dispersed
Bma10g01130 Bma-Chr10:37302351 Bma08g01117 Bma-Chr8:50119908 5.38E-39 transposed
Bma15g00231 Bma-Chr15:2324138 Bma08g01117 Bma-Chr8:50119908 3.49E-58 transposed
Bma11g00120 Bma-Chr11:1143658 Bma08g01117 Bma-Chr8:50119908 0 wgd
Bma03g00129 Bma-Chr3:989516 Bma08g01117 Bma-Chr8:50119908 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01117 K10355 - csv:101220611 754.207