Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01130 ATGGCGTCGCTGCCTTATCCTGAGGTGGATTCGAGTTTACGAGGACTTGCTGGTCGCGCTGAAGGTTTTGGTCGTTTCGCCATTGGAGGGTTTCACGGACCTCTCTATTTTGTCAATAATTTGGCAGATGATGGCCCTGGATCACTTCGCGAAGGATGCCGCAGAAAAGAACCACTATGGATTATTTTTGAGGTTTCAGGTACCATTAATCTTTCTTCGTACTTAAGTGTGTCTTCTTACAAGACCATTGATGGTAGAGGGCAGAGAATTAAGCTCACTGGAAAAGGCCTTAGACTGAAGGAGTGTGAACATATAATTATCTGCAACCTTGAATTTGAGGGGGGCAGAGGTCACGATGTTGATGGTATCCAAATAAAACCAAATTCTCGTCACATTTGGATCGATAGATGCAGCCTCCGTGACTATGATGATGGTTTAATCGATATCACTCGGCAAAGCACTGATATAACTGTGTCTAGATGTTATTTCTCACAACACGATAAGACTATGCTGATTGGAGCAGACGCATCGCACATTGGTGATAGATGCATTCGTGTGACGATTCATCATTGCTTCTTTGACGGAACGAGGCAGAGACACCCTCGTGTTCGATTTGGAAAGGTTCATTTGTACAACAATTACACCAGAAACTGGGGTTTATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATACTCTCAGTGCAATGTATATGAAGCAGGACAGAAGAAGAAGACTTTTGAATTCTATACAGAGAAGGCGGCAGATAAAGAGGAAATGGAGTCTGGTGTAGTAAAATCTGAGGGAGACTTGTTTATAAATGGGGCTCAACCATGCTCATTGGTAGACGTCGGAAAAGAATGCATGTTTCATCCAAGTGAATTCTACCCGACATGGACAATGGAGTCAGCCTCGGATTCACTCAAATCCGTCCTCCAACTCTGCACGGGTTGGCAATCTGTTCAGAGACCGGCCGAGCGACGGTGA 987 44.58 MASLPYPEVDSSLRGLAGRAEGFGRFAIGGFHGPLYFVNNLADDGPGSLREGCRRKEPLWIIFEVSGTINLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHIIICNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITVSRCYFSQHDKTMLIGADASHIGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGLYAVCASVESQIYSQCNVYEAGQKKKTFEFYTEKAADKEEMESGVVKSEGDLFINGAQPCSLVDVGKECMFHPSEFYPTWTMESASDSLKSVLQLCTGWQSVQRPAERR 328
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50205174 50207442 - Bma028570.1 Bma08g01130 87957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01130 328 Gene3D - 6 311 IPR012334 -
Bma08g01130 328 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
Bma08g01130 328 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Bma08g01130 328 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Bma08g01130 328 Pfam Pectate lyase 75 238 IPR002022 -
Bma08g01130 328 SUPERFAMILY Pectin lyase-like 17 300 IPR011050 -
Bma08g01130 328 SMART amb_all 31 244 IPR002022 -
Bma08g01130 328 PANTHER PECTATE LYASE 18-RELATED 2 324 IPR045032 GO:0030570
Bma08g01130 328 PANTHER PECTATE LYASE 2 324 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma04g00648 Bma-Chr4:6245286 Bma08g01130 Bma-Chr8:50205174 1.66E-147 dispersed
Bma08g01130 Bma-Chr8:50205174 Bma01g01699 Bma-Chr1:51761013 2.75E-51 dispersed
Bma08g01130 Bma-Chr8:50205174 Bma03g00061 Bma-Chr3:510136 9.48E-49 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01130 K01728 - csin:114270999 613.224