Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01142 ATGATGGAGGCTCCGCTGAGTCCTGCGGGAGGGAGTCACGAAAGTGGGGGAGATCGGAGTCCGAAAGCCGGACTGCGGGAGCACGATCGATTCCTTCCTATAGCTAATATTAGTCGGATCATGAAGAACGCCTTGCCTGCCAATGGAAAGATCGCCAAGGACGCTAAGGATACCGTCCAGGAATGCGTTTCCGAATTCATCAGCTTCATTACCAGCGAGGCGAGCGACAAATGTCAAAAGGAGAAGAGGAAGACTGTTAATGGCGATGATTTACTGTGGGCAATGGCAACTCTCGGTTTCGAAGATTATATAGTACCGCTTAAAGTGTACTTATCTAGGTACAGGGAGTTGGAGGTAACTAAATCCTCTTATATAACGGTGACACTAAAGGGCAGGCTAGAGGGGGAGATGGATCTGCTAAAAAGGATGGAGTTGGAATATTGCCTGGTCAAAATGCTCAGTTCCTACTGCAGGGCCAGCATCTGA 486 48.97 MMEAPLSPAGGSHESGGDRSPKAGLREHDRFLPIANISRIMKNALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYIVPLKVYLSRYRELEVTKSSYITVTLKGRLEGEMDLLKRMELEYCLVKMLSSYCRASI 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50456198 50457639 + Bma028584.1 Bma08g01142 87969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01142 161 MobiDBLite consensus disorder prediction 1 24 - -
Bma08g01142 161 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 31 95 IPR003958 -
Bma08g01142 161 PRINTS CCAAT-binding transcription factor subunit A signature 97 115 - -
Bma08g01142 161 PRINTS CCAAT-binding transcription factor subunit A signature 59 77 - -
Bma08g01142 161 PRINTS CCAAT-binding transcription factor subunit A signature 78 96 - -
Bma08g01142 161 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 122 IPR027113 GO:0001228|GO:0006355|GO:0016602
Bma08g01142 161 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 122 - -
Bma08g01142 161 Gene3D Histone, subunit A 20 142 IPR009072 GO:0046982
Bma08g01142 161 ProSitePatterns NF-YB/HAP3 subunit signature. 62 78 IPR003956 GO:0005634|GO:0006355|GO:0043565
Bma08g01142 161 SUPERFAMILY Histone-fold 29 123 IPR009072 GO:0046982
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g01142 Bma08g00961 CCT
Bma08g00961 Bma08g01142 ECH
Bma08g01142 Bma08g00961 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma08g00951 Bma-Chr8:48493663 Bma08g01142 Bma-Chr8:50456198 1.78E-73 dispersed
Bma08g01142 Bma-Chr8:50456198 Bma12g00846 Bma-Chr12:39281855 1.01E-56 dispersed
Bma08g01142 Bma-Chr8:50456198 Bma08g00961 Bma-Chr8:48622251 1.66E-64 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
57804 PF00808 CBFD_NFYB_HMF 5.20E-28 CL0012 Bma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01142 K08065 - jre:109002991 214.927