Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bma08g01144 ATGGGGAAGAAAGGCAGTTGGTTTTCTGCAGTGAAGAAAGCTTTAAGTTCTGAATCCAGAGAAACTACAGACGAGATAAAACATAAATCAAAGAAAAAATGGTTTAAAAGGCGAAAGAATTTCGATGCAAGTATCTCTTACGAACATATTCGACTGGATTTTCCTGCCTCTCCATCTTTAGAAAGTCAGAAATCATCAAAGCCTGCAACTTATGCGCCGCCGTCCATGGCTGCACCAGCCACTAAGGCTGTTTCCCATTTGTCGGGAAAATCAAGGGAGGAAATAGCAGCTATCAAGATTCAATCTTGTTTTCGTGGATACATGGCAAGGAGGGTCTTACGTGCGTTGACAGGATTGGTGAAGTTCAAGTCTTTAATACAAGTACGGAACGCTAAACGACAGGCAACGACCACCTTAAAATGCATGCAGACTTTGGGTCGTGTCCAGTCCCTTATTCTGGCGAGCAGGATTAGAACGTCCGAGGAGAATCAATCTCTTCGACGAAACAGACCCGAGAAAGGCATAATCAACAAGATAAGAGCTTCTATTGGTGAAGAATGGGACGATAGCTCTAAATCTAAAGAGCAAATTGAGGAGAAACTAGTGAAGAAGCAGGAAGCTGCCATGAGAAGAGAAAGAGCTTTGTCTTATGCCTCATCTCGTCAGCAAATGTGGCGAAATTCTTCGAAATCTTCGGATCCGACGTTCATGGATCAGAACAATCCGCAACTGGGTTGGAGCTGGTTAGAGCGATGGTTGGCTGCTCGACCATGGGAGACAAGACCAGCCATTGATCGCCATGACCATCCCTCCGACGTATTGTCAGCTTCCCATGATCTCAACTTAGACACTGAAATCCCGGCCAGCACTCCGGCGATTCGACTCTCTCCTCCCAGAGCGCCATCTATATTGTCTCCAGGCAGGAGGAATTCAAAGCGGGCGAGCTCGAGGGCGAGTGCTCGAGGCGGGGAAGACGAATCAATGAGCATCCAGAGCGTCAAGTCGAAACGCCATCGCCGGCATAGCATCGGCGGATCGTCCGTTCGAGACTCTGACAGTCTGGTCGGATCACCTCCTGTTCCAAGCTATATGACCCCCACCCAATCAGCAAAGGCGAAAGAATCGGTCGGTACAACAAGAAAGCGTCCATCGCCATGA 1158 48.1 MGKKGSWFSAVKKALSSESRETTDEIKHKSKKKWFKRRKNFDASISYEHIRLDFPASPSLESQKSSKPATYAPPSMAAPATKAVSHLSGKSREEIAAIKIQSCFRGYMARRVLRALTGLVKFKSLIQVRNAKRQATTTLKCMQTLGRVQSLILASRIRTSEENQSLRRNRPEKGIINKIRASIGEEWDDSSKSKEQIEEKLVKKQEAAMRRERALSYASSRQQMWRNSSKSSDPTFMDQNNPQLGWSWLERWLAARPWETRPAIDRHDHPSDVLSASHDLNLDTEIPASTPAIRLSPPRAPSILSPGRRNSKRASSRASARGGEDESMSIQSVKSKRHRRHSIGGSSVRDSDSLVGSPPVPSYMTPTQSAKAKESVGTTRKRPSP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 50511458 50512982 - Bma028591.1 Bma08g01144 87971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bma08g01144 385 Coils Coil 194 214 - -
Bma08g01144 385 MobiDBLite consensus disorder prediction 347 385 - -
Bma08g01144 385 MobiDBLite consensus disorder prediction 1 30 - -
Bma08g01144 385 MobiDBLite consensus disorder prediction 217 239 - -
Bma08g01144 385 ProSiteProfiles IQ motif profile. 93 121 IPR000048 GO:0005515
Bma08g01144 385 Pfam IQ calmodulin-binding motif 96 113 IPR000048 GO:0005515
Bma08g01144 385 PANTHER IQ-DOMAIN 5-RELATED 1 377 - -
Bma08g01144 385 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 377 - -
Bma08g01144 385 MobiDBLite consensus disorder prediction 287 385 - -
Bma08g01144 385 Gene3D - 28 142 - -
Bma08g01144 385 SMART iq_5 92 114 IPR000048 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bma08g01144 Bma08g00947 CCT
Bma08g00947 Bma08g01144 ECH
Bma08g01144 Bma08g00947 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bma06g01348 Bma-Chr6:50391614 Bma08g01144 Bma-Chr8:50511458 2.01E-24 dispersed
Bma07g01423 Bma-Chr7:50036173 Bma08g01144 Bma-Chr8:50511458 5.04E-42 dispersed
Bma08g00947 Bma-Chr8:48453472 Bma08g01144 Bma-Chr8:50511458 3.14E-105 dispersed
Bma08g01144 Bma-Chr8:50511458 Bma10g00020 Bma-Chr10:311338 1.36E-41 dispersed
Bma14g00379 Bma-Chr14:4537470 Bma08g01144 Bma-Chr8:50511458 2.64E-33 dispersed
Bma14g02008 Bma-Chr14:43499126 Bma08g01144 Bma-Chr8:50511458 2.53E-14 dispersed
Bma08g01144 Bma-Chr8:50511458 Bma04g01643 Bma-Chr4:52333556 7.89E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bma08g01144 - - twl:120005786 361.688